Lleu002265.1
Basic Information
- Insect
- Lasioglossum leucozonium
- Gene Symbol
- -
- Assembly
- GCA_028454225.1
- Location
- CM052209.1:6995324-6998217[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.3 3.8e+02 1.9 0.5 5 20 321 336 320 338 0.91 2 15 0.0084 0.6 10.7 2.4 2 23 408 430 407 430 0.96 3 15 0.017 1.2 9.8 0.1 1 23 436 458 436 458 0.92 4 15 3.5e-06 0.00025 21.3 3.4 1 23 464 486 464 486 0.96 5 15 0.00031 0.022 15.2 1.8 1 23 495 517 495 517 0.96 6 15 3.3e-05 0.0023 18.3 2.0 1 23 523 545 523 545 0.97 7 15 1e-06 7.1e-05 23.0 0.9 1 23 550 572 550 572 0.97 8 15 0.026 1.8 9.2 7.8 1 23 579 601 579 601 0.99 9 15 0.0024 0.17 12.4 1.2 2 23 621 642 620 642 0.97 10 15 0.0036 0.25 11.9 0.4 2 23 650 672 649 672 0.96 11 15 0.00029 0.021 15.3 0.6 1 23 678 700 678 700 0.96 12 15 0.00025 0.018 15.5 2.7 1 23 706 728 706 728 0.98 13 15 7.1e-07 5e-05 23.5 1.0 1 23 734 756 734 756 0.98 14 15 2.5e-05 0.0018 18.7 4.6 1 23 762 784 762 785 0.96 15 15 0.00045 0.032 14.7 0.3 2 23 790 811 789 811 0.96
Sequence Information
- Coding Sequence
- ATGAAAATAGTTTGTGCTGCAAAAAATTGTAAATACTCTTCGGAAACTGAAGACTCGACACACGTAATTTTTATTAATTTTCCGAACGATGACATGTCTAAGATATGGGCACACCATTGTGGCAGATCAGACTTTTTAACAAAGTCTAACGAAGAATTACATTTAAATTACTATGTATGTTCCCATCACATTGAAGATCATTACTATTTGAACAAAACTGACCCCATTATAATAGACCACCATGCTGTTCCTACATTATTCGAATCGGATGATTTAGCGAAAAAAAATGTACAAAACATATTTGTTAGAAACGAACAAGCTCAAGTAACAGACAATGTTGGATTAACAGATTGTGATATAGAGGTTGAGATGGACCAGTATCAAGATATTAACACAAGGTTATCCAATTTATGTAGAATATGCGGTGAACCATGTTTGGATGGTATAGAAATCTTCACTGAGAAAGGCATAGAATTGAAAATAAGAGAAAAAATGAGTTTACACTTGCCAATAAATCCTAATTTGGAAGACTCAATGCCACAAAAAATATGTAGCAATTGTTATGATAATTTGGAAACAGCTCATTTATTAGTTACTACATCTTTAAAGACTGATATGAGATTGAGAAAGTTTCTAAATATCAAGGAAGGATTAAGTTATTATGACAATAAATACAATGAAATAGTAAGAACGTGTTCTTCGGAAGTGATAAACGAGATGTACATGAATAGGACAATTCATACTATGTCTATTGAATTATCGTCTAACGAAGGAAGAGAAGTAATAATGAATCAGGATGTGCCCACAAAATTAAGTTATTCGGAGGATATTGTTCCGAAGAAAGCTAGTTCATCGAACAACATAAGGAAAGAAATGCAATTTGAATTAAATAGACTTATTGAATCGTACAGTGATGCGCAAAACGATATAGCAAACGGTATTAACGAGATTGCATCATTCCACTGTAAAGATACATTTAAAACTCGAGCAATGTTTGAGAATCACAAGATATTAGGCGACGAAGAAGAAATAATAGTACAGAAACAGAAAGAAATATCTGGCAGTATGAACGCAAATGAATCATTAGCGCTTTTAAATTGCAAACCTTTTCAAGAAGAAAATTATGAAATCGCGGATAAACAGTATGAAACAGAAATTGACTGCAATGTTCATAAAAATACCGATAATATAAATACTATTGCAATGGTGGAAACAAATAAAAAATGTGGTCATTGTCAGTCCATTTATAGTACCAAAAAAGAACTATTAAATCACATCGCAAAACGTCACGAAAGTCAATTATTATTCGCGTGCATTATCTGCGACAAAAATTATGAAAAATGGTCGAGCTTAGATGTTCACGAAGCTACACACAGAACAGATAAACCGTATCTGTGTGATTTATGTGGAAAGAGTTTCAAGCACTCCAATAATCTAAGGGGTCACAAGAGAACCCATTTAGACGACTCGAAAAAGAAACGACACGCCTGTGAAATTTGTGGGAACGCGTTTAGGTCTAGATTTCACTTGGGAGAACACATGAACCAGCACAATGACCACAAACCATACTTTTGCGAAAAGTGTGGCAAAGCTTTTTACAAGAGGATACAATTAAGACAACACAGGCTATCTCATGGAACGAATAAACATGTTTGTCCAATATGTGGAGCATCATTCAATCGCAAAGGAAATATGAATACTCACCTTAAAAGACATAGTAACGATAGTGGAGTGTACACATGTAGCATTTGCACGTGCAAATGCAAGTCGATGAGTGAATTAAAATTGCATCGGAAGAAACATACGGAGGAAGATGTTATGGATAGTATTAAGGAAAAGTACTCCGATCAAACGGAATGGCAATGCAAAACTTGTAGCCAGATGTTCACCGCGCGAACTGATTTTTTAAAACACGTACGCTTGCATAATGGAGAAAGAACGAGGGTTGAATGTGATACATGCGGCAAACAGTTGGCTAGTAAAAATTCGTTAATTTACCATAAAAAATCTATGCATTCTAAGGAGAGGCTACACATGTGTCAATATTGCGGGGAATCGTTCGTTTCCAAAGATGCGCGTCTCATACACGAAAGGATCCACACCGGAGAGCGTCCTTACGTTTGCAATATATGCAAAATGGAATACAAGTGTTCCAGCAATCTCAATCAGCATATGAAAATTCATTCGGACATTAAACCTCATAGATGTACATATTGCGATAGAAGTTTCATACGCAAGGGAGCGCTGGTTGTTCACCTAAGAGTCCATACAGGCGAAAAACCCTTTTCCTGCGAAACCTGTGGCAGAAGATTTTCGCAAAAGAACGATATGCTAAAACATACGAAAACGCATCACGCGAAAACGTTGCGTTGCGAGAAATGCGACGAAGTTTTCGCGAAAAAGAAAGATATTTTGAAGCATCTCGCGATGCATAAACAAAATGATCTTGTAGTTTAA
- Protein Sequence
- MKIVCAAKNCKYSSETEDSTHVIFINFPNDDMSKIWAHHCGRSDFLTKSNEELHLNYYVCSHHIEDHYYLNKTDPIIIDHHAVPTLFESDDLAKKNVQNIFVRNEQAQVTDNVGLTDCDIEVEMDQYQDINTRLSNLCRICGEPCLDGIEIFTEKGIELKIREKMSLHLPINPNLEDSMPQKICSNCYDNLETAHLLVTTSLKTDMRLRKFLNIKEGLSYYDNKYNEIVRTCSSEVINEMYMNRTIHTMSIELSSNEGREVIMNQDVPTKLSYSEDIVPKKASSSNNIRKEMQFELNRLIESYSDAQNDIANGINEIASFHCKDTFKTRAMFENHKILGDEEEIIVQKQKEISGSMNANESLALLNCKPFQEENYEIADKQYETEIDCNVHKNTDNINTIAMVETNKKCGHCQSIYSTKKELLNHIAKRHESQLLFACIICDKNYEKWSSLDVHEATHRTDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHACEICGNAFRSRFHLGEHMNQHNDHKPYFCEKCGKAFYKRIQLRQHRLSHGTNKHVCPICGASFNRKGNMNTHLKRHSNDSGVYTCSICTCKCKSMSELKLHRKKHTEEDVMDSIKEKYSDQTEWQCKTCSQMFTARTDFLKHVRLHNGERTRVECDTCGKQLASKNSLIYHKKSMHSKERLHMCQYCGESFVSKDARLIHERIHTGERPYVCNICKMEYKCSSNLNQHMKIHSDIKPHRCTYCDRSFIRKGALVVHLRVHTGEKPFSCETCGRRFSQKNDMLKHTKTHHAKTLRCEKCDEVFAKKKDILKHLAMHKQNDLVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00861353;
- 90% Identity
- iTF_00762710;
- 80% Identity
- iTF_00862617;