Lmar017816.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum marginatum
Gene Symbol
-
Assembly
GCA_028455795.1
Location
CM052276.1:4409084-4412293[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 5 4.8e+02 1.8 0.6 5 20 319 334 318 336 0.91
2 15 0.017 1.6 9.6 2.6 2 23 398 420 397 420 0.96
3 15 0.014 1.4 9.8 0.1 1 23 426 448 426 448 0.92
4 15 3e-06 0.00029 21.3 3.4 1 23 454 476 454 476 0.96
5 15 0.00026 0.025 15.2 1.8 1 23 485 507 485 507 0.96
6 15 6e-06 0.00057 20.4 1.8 1 23 513 535 513 535 0.97
7 15 8.6e-07 8.1e-05 23.1 0.9 1 23 540 562 540 562 0.97
8 15 0.025 2.4 9.0 3.8 1 23 569 591 569 591 0.99
9 15 0.0013 0.12 13.0 0.7 2 23 611 632 610 632 0.97
10 15 0.00082 0.078 13.7 0.2 2 23 640 662 639 662 0.96
11 15 0.00092 0.087 13.5 2.0 1 23 668 690 668 690 0.96
12 15 0.00028 0.026 15.2 3.2 1 23 696 718 696 718 0.98
13 15 1.4e-06 0.00013 22.4 1.0 1 23 724 746 724 746 0.98
14 15 2.8e-06 0.00026 21.5 2.8 1 23 752 774 752 775 0.96
15 15 0.00038 0.036 14.7 0.3 2 23 780 801 779 801 0.96

Sequence Information

Coding Sequence
ATGAAAATAGTTTGTGCTGCAAAGAATTGTAAATACTGTTCGGAAACTGAAGACTCGACGCACGTCATTTTTATTAATTTCCCGAACGATGACATGTCTAAAATATGGGCACACCATTGCGGCAGATCGGACCTTTTAACAAAGTCTAATGAAGAGTTACATTTAAATTACTATGTCTGTTCCAACCATATTGAAGACCATTACTATTTGAACAAAACTGACCCCATTATAATAGACCAACATGCTGTTCCTACATTATTTGGATCAGACGATATAGCGAAGAAAGATGTAGCAAATATGTTTGTTAGAAACGAACAAATTGAAGTAACAAACAATGTCGAATTAACGGATTGCGATATAGATGTAGAGATGGACCAGTATCAAGATATTAACACAAGGTTTTCCAATTTATGTAGAATATGTGGCGAGCCATGTTTAGACGGTATAGAAATCTTCGCTGAAAAAGGCATAGAACTAAAGATAAGAGAAAAAATGAGCTTACACTTGCCAATAAGTCCTAATTTGGAAGACTTGATGCCGCAAAAGATATGTAGCAATTGTTACGATAATTTGGAAGCAGCTCATTTATTAGTTACGACATCTTTAAAGACCGATATGAGACTGAGAAAGTTTCTAAACATCAAGGAAGGATTAAGTTATTACGACAATAAATACAATGAAATAGTAAGGACATGTTCTTCGGAGGTGATAAACGAGATGTACATGAACAGAACAATTCATACTATGTCTATAGAACTATCGTCTAATGAAGGAAGAGAAGTAATGATGAATCAGGATGTGCCCACAAAATTGAGTTATTCGGAGGATCCAAAGAAAGCTAGCTCTTCGAACAACATAAGAAAAGAGATGCAATCCGAATTAAATAGACTTATCGAATCGTACAGCGGAGCACAAAACGATATAGCAAACGGTATTAACGAGATTGCATCGTTCCATTGTAAAGATACGTTTAAAACTCGAGTAATGTTTCAGAATCACAAGATACTGTGCGACGAAGATGAAATAATAGTACAGAAGCAGAAGGAAATATCTGGTAGCATAAACGCGAATGAATCATTAGTGCTTTTGAATTGCAAACCTTTTCAAGAAGAACATTACAAAGTCACGGATAAACAGCACGCGACAGAAATTGATAATATAGATGCTATTGCAATGGCGGAAACAAATAAGAAATGTGGTCACTGTCGGTCTATTTATAGCACCAAAAAAGAACTATTGAATCACATCGCGAAACGTCACGAAAGTCAACTATTGTTCGCGTGCATTATCTGCGATAAAAATTATGAAAAATGGTCGAGCTTAGATGTTCACGAGGCTACGCACAGAACAGATAAACCGTATTTGTGCGATTTATGCGGAAAGAGTTTTAAGCACTCGAATAATCTAAGGGGTCACAAAAGAACCCATTTAGACGACTCGAAAAAGAAACGGCACGCCTGCGAAATTTGCGGGAACGCGTTTAGGTCTAGATTTCATTTGGGAGAGCACATGAACCAGCACAACGATCACAAACCATATTTTTGCGAAAAGTGTGGCAAAGCTTTTTCCAAAAGGATACAATTAAGACAACACAGACTATCTCATGGAACGAATAAACACGTTTGTCCAATATGTGGAGCATCTTTCAATCGCAAGGGAAATATGAATACTCACCTGAAAAGACATAGCAACGACAGTGGAATGTACACCTGTAGTATTTGCGCGAGCAAATGTAAGTCGATGAGCGAATTGAAATTGCATCGGAAGAGACACACAGAGGAAGACATCATGGAAAGTATTAAGAAAAAGTACTCCGATCGAACGGAGTGGCAGTGCAAAACTTGTAGCCAGATGTTTGCAGTGCGAACAGATTTTTTAAACCACGTACGCTCGCATAAAGGAGAAAGAACGAGGGTTGAATGTGATATTTGTGGCAAACAGTTAGCTAATAAAAATTCTTTAATATACCATAAGAAATCTATGCATTCCAAGGAGAGGCCGCACATGTGTCAATACTGTGGAGAATCGTTCGTTTCCAAAGAGGCGCGTCACATACACGAAAGAATCCACACCGGAGAACGTCCTTACGTTTGCAAAATTTGCAAAATGGAATACAAGTGTTCCAGCAATCTCAATCAGCATATGAAAATTCATTCGGACATTAAACCCCATAGATGTACATACTGCGGTAGTAGTTTCACGCGCAAGGGAGCGCTGGCTGTTCACCTAAGAATCCATACAGGCGAAAAACCCTTTCCCTGCGAAATCTGTGGCAGAAGATTTTCGCAGAAGAACGACATGTTGAAACATACGAAAACGCATCACGCGAAACCGTTGCGTTGCGAGAAATGCGACGAGGTTTTCGCGAAGAAGAAGGATATTTTGAAGCATCTCGCGATGCACAAACAAAGTGACCTTATAGTTTAA
Protein Sequence
MKIVCAAKNCKYCSETEDSTHVIFINFPNDDMSKIWAHHCGRSDLLTKSNEELHLNYYVCSNHIEDHYYLNKTDPIIIDQHAVPTLFGSDDIAKKDVANMFVRNEQIEVTNNVELTDCDIDVEMDQYQDINTRFSNLCRICGEPCLDGIEIFAEKGIELKIREKMSLHLPISPNLEDLMPQKICSNCYDNLEAAHLLVTTSLKTDMRLRKFLNIKEGLSYYDNKYNEIVRTCSSEVINEMYMNRTIHTMSIELSSNEGREVMMNQDVPTKLSYSEDPKKASSSNNIRKEMQSELNRLIESYSGAQNDIANGINEIASFHCKDTFKTRVMFQNHKILCDEDEIIVQKQKEISGSINANESLVLLNCKPFQEEHYKVTDKQHATEIDNIDAIAMAETNKKCGHCRSIYSTKKELLNHIAKRHESQLLFACIICDKNYEKWSSLDVHEATHRTDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHACEICGNAFRSRFHLGEHMNQHNDHKPYFCEKCGKAFSKRIQLRQHRLSHGTNKHVCPICGASFNRKGNMNTHLKRHSNDSGMYTCSICASKCKSMSELKLHRKRHTEEDIMESIKKKYSDRTEWQCKTCSQMFAVRTDFLNHVRSHKGERTRVECDICGKQLANKNSLIYHKKSMHSKERPHMCQYCGESFVSKEARHIHERIHTGERPYVCKICKMEYKCSSNLNQHMKIHSDIKPHRCTYCGSSFTRKGALAVHLRIHTGEKPFPCEICGRRFSQKNDMLKHTKTHHAKPLRCEKCDEVFAKKKDILKHLAMHKQSDLIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00861353;
90% Identity
iTF_00762710;
80% Identity
iTF_00864021;