Lalb002154.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum albipes
Gene Symbol
-
Assembly
GCA_000346575.1
Location
KB639694.1:225360-228581[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 4.9 4e+02 2.0 0.5 5 20 319 334 318 336 0.91
2 14 0.082 6.6 7.6 4.7 2 23 398 420 397 420 0.96
3 14 0.0095 0.76 10.5 0.1 1 23 426 448 426 448 0.92
4 14 3.3e-06 0.00026 21.4 3.4 1 23 454 476 454 476 0.96
5 14 0.00029 0.023 15.3 1.8 1 23 485 507 485 507 0.96
6 14 6.6e-06 0.00053 20.4 1.8 1 23 513 535 513 535 0.97
7 14 9.4e-07 7.5e-05 23.1 0.9 1 23 540 562 540 562 0.97
8 14 0.0014 0.12 13.1 0.7 2 23 590 611 589 611 0.97
9 14 0.0012 0.098 13.3 0.2 2 23 619 641 618 641 0.96
10 14 0.00042 0.034 14.8 0.6 1 23 647 669 647 669 0.96
11 14 0.0003 0.024 15.2 3.2 1 23 675 697 675 697 0.98
12 14 2.4e-08 1.9e-06 28.1 0.4 1 23 703 725 703 725 0.99
13 14 1.3e-05 0.001 19.5 3.6 1 23 731 753 731 754 0.96
14 14 0.00042 0.034 14.8 0.3 2 23 759 780 758 780 0.96

Sequence Information

Coding Sequence
ATGAAAATAGTTTGTGCTGCAAAGAATTGTAAATACTGTTCGGAAACTGAAGACTCGACGCACGTCATTTTTATTAATTTCCCGAACGATGACATGTCTAAAATATGGGCACACCATTGCGGCAGATCGGACCTTTTAACAAAGTCTAACGAAGAGTTACATTTAAATTACTATGTCTGTTCCGACCACATCGAAGACCATTACTATTTGAACAAAACTGACCCCATTATAATAGACCAACATGCTGTTCCTACGTTATTTGGATCAGACAACATAGCAAAGAAAAATGTAGCAAATATGTTTGTTAGGAACGAACAAATTGAAGTAACAAACAATGTCGAACTAACGGATTGCGATATAGATGCCGAGATGGACCAGTATCAAGATATTAACACAAGGTTTCCCAATTTATGTAGAATATGTGGCGAGCCTTGTTTAGACGGTATAGAAATCTTTGCCGAGAAAGGTATAGAATTAAAGATAAGAGAAAAAATGAGTTTACACTTGCCGATAAATCCTCATTTGGAAGACTTGATGCCGCAAAAGATATGTAGCAATTGTTATGATAATTTAGAAGCAGCTCATTTATTAGTTACGACATCTTTGAAGACCGACATGAGACTGAGAAAGTTTCTAAACCTCAAAGAAGGATTAAGTTATTACGACAATAAATACAATGAAATAGTACGAACGTGTTCTTCGGAGATGATAAACGAGATGTACATGAACAGAACAATTCATACTATGTCTATAGAACTATCGTCCAACGATGGAAGTGAAGTAATAATGAATCAGGATGTGCCTACAAAATTGAGTTATTCGGAGGATCCGAAGAAAGCTAGCTCTTTGAACAACATAAGAAAAGAGATGCAATCCGAATTAAATAGACTTATCGAATCGTACAGCGGTGCGCAAAACGATATGGCAAACGGTATTAACGAGATTGCATCGTTCCACTGTAAAGATACGTTTAAAACTCGAGCAATGTTTGAGAATCACAAGATATTGTGCGACGAAGATGAAATAATACTACAGAAGCAAAAAGAAATATCTGGTAGTATAAATGCGAATGAATCATTAGTGGTTTTAAATTGCAAACCTTTTCAAGAAGAACATTACGAAGTCACGGATAAACAGCACGCGACAGAAATTGATAACATAGATACAATTGCAATGGTGGAAACAAATAAGAAATGTGGTCACTGTCGGTCCATTTATAGCACCAAAAAAGAACTATTGAATCACATCGCGAAATGTCACGAAAGTCAACTATTGTTCGCGTGCATTATCTGCGACAAAAAATATGAAAAATGGTCGAGCTTAGATGTTCACGAGGCTACGCACAGAACAGATAAACCGTATCTCTGCGATTTATGCGGAAAGAGTTTTAAGCACTCAAATAATCTAAGGGGTCACAAGAGGACCCATTTAGACGACTCGAAAAAGAAACGGCACGCCTGCGAAATTTGTGGGAACGCGTTTAGATCCAGATTTCACTTGGGAGAGCACATGAACCAGCACAACGACCACAAACCATACTTTTGCGAAAAGTGTGGCAAAGCTTTTTCCAAGAGGATACAATTAAGACAACACAGGCTATCTCATGGAACGAATAAACATGTTTGCCCGATATGTGGAGCGTCTTTCAATCGCAAAGGAAATATGAATACTCACCTGAAAAGACATAGCAACGACAGCGGAATGTACACCTGTAGCGTAAATATTATGGAAAGTATTAAGAAAAAGTACTCCGATCGAACGGAGTGGCAGTGCAAAACTTGTAGCCAGATGTTCGCCGTGCGAACAGATTTTTTAAACCACGTACGCTCGCATAAAGGAGAAAGACCGAGGGTTGAATGTGATATTTGTGGCAAACAGTTGGCTAGCAAAAATTCTTTAATCTATCATAAGAAATCTATGCATTCCAAGGAGAGGCCACACATGTGTCAATACTGCGGGGAATCGTTCGTTTCCAAAGAGGCGCGTCTCATACACGAAAGGATCCACACCGGAGAACGTCCTTACGTTTGCAAGATATGCAAAATGGAATACAAGTGTTCCAGCAATCTAAATCAGCATATGAAAATTCATTCGGACGTTAAACCCTATAGATGTACATACTGCGGTAGAAGTTTCACGCGCAAGGGAGCGCTGGCTGTTCACCTAAGAATCCATACAGGCGAAAAACCCTTTCCCTGCGAAACCTGTGGCAGAAGATTTTCGCAGAAAAACGATATGTTGAAACATACGAAAACGCATCACGCGAAACTGTTGCGTTGCGAGAAATGCGACGAGGTTTTCGCGAAGAAGAAGGATATTCTGAAGCATCTCGCGATGCACAAACAAAGTGACCTTATAGTTTAA
Protein Sequence
MKIVCAAKNCKYCSETEDSTHVIFINFPNDDMSKIWAHHCGRSDLLTKSNEELHLNYYVCSDHIEDHYYLNKTDPIIIDQHAVPTLFGSDNIAKKNVANMFVRNEQIEVTNNVELTDCDIDAEMDQYQDINTRFPNLCRICGEPCLDGIEIFAEKGIELKIREKMSLHLPINPHLEDLMPQKICSNCYDNLEAAHLLVTTSLKTDMRLRKFLNLKEGLSYYDNKYNEIVRTCSSEMINEMYMNRTIHTMSIELSSNDGSEVIMNQDVPTKLSYSEDPKKASSLNNIRKEMQSELNRLIESYSGAQNDMANGINEIASFHCKDTFKTRAMFENHKILCDEDEIILQKQKEISGSINANESLVVLNCKPFQEEHYEVTDKQHATEIDNIDTIAMVETNKKCGHCRSIYSTKKELLNHIAKCHESQLLFACIICDKKYEKWSSLDVHEATHRTDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHACEICGNAFRSRFHLGEHMNQHNDHKPYFCEKCGKAFSKRIQLRQHRLSHGTNKHVCPICGASFNRKGNMNTHLKRHSNDSGMYTCSVNIMESIKKKYSDRTEWQCKTCSQMFAVRTDFLNHVRSHKGERPRVECDICGKQLASKNSLIYHKKSMHSKERPHMCQYCGESFVSKEARLIHERIHTGERPYVCKICKMEYKCSSNLNQHMKIHSDVKPYRCTYCGRSFTRKGALAVHLRIHTGEKPFPCETCGRRFSQKNDMLKHTKTHHAKLLRCEKCDEVFAKKKDILKHLAMHKQSDLIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00861353;
90% Identity
iTF_00762710;
80% Identity
iTF_00860446;