Lpop024344.2
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- retn
- Assembly
- GCA_905220505.1
- Location
- HG992165.1:11960137-11970927[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-19 3.3e-16 60.4 0.0 16 89 38 109 26 109 0.93
Sequence Information
- Coding Sequence
- ATGCTTCCGCAACACACTAATAAAGGCTGTTTTATTGAGAACAAACTAATAATACACCGAAAAGACTTCGCGTCTATAACGCTAACATCTAAACCTCATTCACCAACACATCACAGTACGCCAATCAATCGACTGCCGATAATGGCCAAGTCTGTTCTGGACCTGTACGAGCTGTATAACCTGGTGATAGCACGCGGCGGACTCGTCGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTCCGGCTGCCGTCCTCCATCACGTCTGCTGCCTTCACACTGCGCACACAATATATGAAATACTTGTATGACTACGAGTGCGAGAAGAAGAACCTGTCCACTCGCAGCGAGCTGGACGCCGCCATAGAAGGCAACAAGCGCGAGGGCAGACGTGCCTCCGGACAGTACGACGCCCAGGCGGCACTGGCCATGCCGCCGCTGAACCGCGGTGTGCCGGCATCTCTTGCGCAACTCTCTCAACACATGCAGCCGCTGTCGCTGTCCCTAGGTGGTGGGGTTGGGGTTCCCCGACTCCCCCCGCTACCCCCGCACGCACCGCACATCTCCCAGCATGATATCGAGTACCGCGTCAGGGAGTACATGAAGATGATCCAGCAGCAACGGGACTTGATGAGGAATGGATCAGAATCCCCTCCCGGTGGTAACGGGCCAGCGCCGATGATGTCTCCGCGCGACGCCGCCGCTCTCAGCGCGATCGACGTGTCGCGCCTCACGCTGTGGTCGCTCTACAACAATAACAACAACAGCCCGCAACCGGACCTCGAACCGCAACGTGAGGCGCTAAACCTAAGCGAAAGTCCAAACTCTAGCGCAAGCGGCGGCAAGCGTGAAGCGTGCCGGTCCCCTCCCCCGCCGGCGAAGCGCCGCACCCCGCGGCCGCCCTCGCCCAGGCTCCCCTCGCCGCCGCGCCAGTCGTGCCTGCCAACCACTCCGCAGTCACAGCTGAACGGAGGCAGTGCTAGTAATGGAGTCAATGGGGCGGCGTTCAAAATCACTACAAGAGGTAAATGCTTATTGATTCTATAG
- Protein Sequence
- MLPQHTNKGCFIENKLIIHRKDFASITLTSKPHSPTHHSTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRGVPASLAQLSQHMQPLSLSLGGGVGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRDLMRNGSESPPGGNGPAPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSASGGKREACRSPPPPAKRRTPRPPSPRLPSPPRQSCLPTTPQSQLNGGSASNGVNGAAFKITTRGKCLLIL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00818932;
- 90% Identity
- iTF_01502754; iTF_01503633; iTF_00063364; iTF_01010151; iTF_00290450; iTF_00994153; iTF_00859244; iTF_01358673; iTF_00787405; iTF_01429718; iTF_00427878; iTF_00428784; iTF_00818932;
- 80% Identity
- -