Lcon019518.2
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- retn
- Assembly
- GCA_949316025.1
- Location
- OX438928.1:6257111-6263028[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-19 5.6e-16 59.6 0.0 17 89 8 78 2 78 0.93 2 2 5.2 2e+04 -3.0 0.0 25 38 210 223 172 224 0.65
Sequence Information
- Coding Sequence
- ATGCAGCGTTTACGGTTTACAAGCACTCCTATCAATCGGTTGCCGATAATGGCTAAGTCGGTACTGGACTTATACGAGTTGTACAACCTGGTGATAGCTCGCGGCGGGCTCGTCGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAAGGGCTTCGGCTGCCGTCCTCGATCACGTCTGCTGCCTTTACGCTGCGCACACAGTACATGAAATACTTGTACGACTACGAGTGTGAAAAGAAGAACCTGTCGACTCGCAGCGAGCTGGACGCCGCTATTGAAGGCAACAAACGTGAGGGCAGGCGTGCTTCAGGACAGTATGATGCGCAGGCGGCGCTTTCCATGCCGCCGCTGAACCGCGGTGTACCGGCGTCTCTTGCGCAGCTATCTCAACACATGCAGCCGTTGTCGCTGTCCCTGGGAGGCGGGGTGGGGGTCCCGCGACTCCCCCCACTGCCTCCCCATGCGCCACACATCTCCCAGCACGATATAGAGTACCGCGTGCGGGAGTATATGAAGATGATACAGCAGCAGCGGGAGTTGATGAGGAATGGTTCTGAATCGCCTCCAGGCAGCAACGGTCCCGCGCCGATGATGTCGCCGCGCGACGCCGCCGCGCTCAGTGCCATCGACGTGTCGCGGCTCACGCTGTGGTCGCTctacaacaacaacaataacaACAGCCCGCAACCGGACCTCGAACCGCAACGtgAGGCGCTAAATCTAAGCGAAAGTCCGAACTTGAACGTGAGCATCAAGCGTGAAGCGTGTCGCTCCCCTCCCCCGCCGGCGAAGCGACGCACCCCGCTGCCGCCCTCCCCCCGGCTACCCTCGCCTCCGCGCCAGGCGTGCATGCCCACAACTCCTCAGTCACAACTCAACGGAGGCAGCGCTACTAATGGAGTCAATGGGGCAGCTTTTAAAATTACTACTCGagGTGACGCAAGCACAGGCGATCAACAACTCGTCGTATCGATAGAACTGAATGGAGTTACTTACGAAGGAGTTCTCTTCCCATCACAGAACGGCAACGGCCAAAATGGTCACAGGCAAATGGTGTCCTAA
- Protein Sequence
- MQRLRFTSTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALSMPPLNRGVPASLAQLSQHMQPLSLSLGGGVGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELMRNGSESPPGSNGPAPMMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNLNVSIKREACRSPPPPAKRRTPLPPSPRLPSPPRQACMPTTPQSQLNGGSATNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQNGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00818932;
- 90% Identity
- iTF_00858329;
- 80% Identity
- -