Lsuf027073.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402569.1:6262776-6265112[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.7e-06 0.00014 23.0 3.6 1 23 11 34 11 34 0.95 2 20 0.043 3.7 9.1 2.7 2 23 40 62 39 62 0.94 3 20 7e-06 0.00061 21.0 0.3 2 23 71 93 71 93 0.97 4 20 0.00027 0.023 16.0 3.0 2 23 102 124 101 124 0.94 5 20 7.3e-06 0.00063 20.9 0.4 2 23 132 154 132 154 0.97 6 20 9e-06 0.00077 20.7 1.6 2 23 162 184 161 184 0.95 7 20 5.8e-07 5e-05 24.4 1.4 1 23 190 213 190 213 0.98 8 20 6e-05 0.0052 18.1 0.5 1 23 249 272 249 272 0.94 9 20 0.14 12 7.5 2.3 1 23 300 322 300 323 0.96 10 20 1.1 97 4.6 0.6 2 21 331 350 330 351 0.93 11 20 0.0085 0.73 11.3 0.8 2 23 360 382 360 382 0.95 12 20 0.0071 0.61 11.6 6.7 1 23 405 428 405 428 0.97 13 20 0.0021 0.18 13.2 1.0 2 23 435 457 434 457 0.96 14 20 4e-05 0.0035 18.6 1.9 2 23 464 486 463 486 0.94 15 20 0.0084 0.72 11.3 2.2 1 23 492 515 492 515 0.97 16 20 0.16 14 7.3 6.7 2 23 523 545 523 545 0.95 17 20 0.00022 0.019 16.3 0.1 1 23 552 575 552 575 0.96 18 20 0.035 3 9.4 2.0 1 23 582 605 582 605 0.93 19 20 0.02 1.7 10.2 2.7 3 23 620 641 619 641 0.91 20 20 5.7 4.9e+02 2.4 0.7 1 12 691 702 691 705 0.88
Sequence Information
- Coding Sequence
- ATGGCATTTATGTATCACAATAACTTAGATTATTATTGCGATTACTGCGATCGCGCATTTACTAGGAAGTACAATCTCCAAACCCATATAGAAAACTGCCATAACAATACATCTTGCTTTTGTGATGTTTGTAATTGTAAATTCGGAAGCCCAACTGGCTTACAGTTACATCTTTCTAGAGGACACAATAGTTTCGGTCAATCATCGCCAGAATGCGATATTTGCGGCAGGATTTTTACCAGAAAACAAAACATAACATCTCACATGATTACAGTCCATCTCCAAGGAATTGGACCTGAAATCAGATGCAATATTTGCTGTAAAGTATTCACTTCGGAAAGAAATCTGAAGCGTCACATGAGCCAACTACACAATCCAGATGTCGAGTATCCTACTTGCGATGAATGTAAAAAAGTTTTCAAGAGCAAAAACTCTCTCGTTATTCACTTGCGAGTGGCTCATAATGGAAGTGACAATACTATAAGATGCAATCTTTGCCAGAAGATCTATACAAATAACAGGAATCTGAAGAGACACATGGATATGTTTCATGGTAAAAAAGCGGAATACAGATGTGAAATATGTCCTAAAATGTACACTTCTAATCAGAGTTTAAGACGTCACGTCAGAACTAGACACGATACTGATATAGATGATCTGAAAACTGATTTTGAGAACAGATCTTTCATGGGCGACATTGAATCTGACATTGAATCTAACGATTTCAACAATGAAATTAACGCTTTCTTATGTGAGACATGCAATAAGCCGTTCAACGATGAACAACTGCTCAGAAGACATATAAAACTTGAACATTCATTTGAAACTTTCTACCAATACTGTAAGAACTATCTCCAAAGACAGAACAACGAAGAGCCGGTGGTTATGCAAATGGTTTTTAAATGCGAGTTCTGTTTCTCAGCTTTTCTAAGTGTCTATGAGCTGAAAGACCACATGAAAGTTCACCACGATATTGAGTACTGTCTATCAACATGTAACGTGTGTTTCAATAAGTTTTTCAGTAAAGAAACTATGGCGGAACATAGAAAGATATGTTTACCGCCGCCGGACGTAAACTCTTGCAGCTACTGCGACAAACTTTTCACCGATATCTCCAGCCTGGAGTTTCACACTAGAATTTTTCATCCGCAGTCACAGATTGCGGATTCGTACATATCTTCAACTAAAGACGATCCAACAGACGTGTGTTCGTATAAATGCCGCCATTGCGAAAGAATGTATTACAGCGAGCGATCTTTGAAACATCACATCAAATTAAAGCATACTACTGTTGAAGCGGTGCAGTGCGAGTATTGTCTAAAGTTATGCAGCAATAAATACTATCTCGCTTCTCATATCAAGATCGTCCACAATAACGAAACATCAGTCAAATGCGACTATTGTGAGAAGCGGTTCAAATCAAAGAGGAATATACGCAGACACATCGAATACACACACATGGGAATGCAGAGATACAAATGCATTGAATGCGAAACTCTTTTCAAAGAAAAACGCAGCTTACGCAAGCATGTCAGGACGAAGCATCCAAACTCGGCCAGCTTTCCCCAATGCCACATTTGCCACAAACGATTCGAGTCTGCAAAATCATGCAAAATACATTTAAAACTGATTCACTCGTTTAATATGAACACCTACCCTTGTGATTTGTGTTCCGTATCGTTCAGTTCTAAAGAAGCTTTGGAAATCCATTTAGGTACGAAACACTTGGCTGAAGATGAAATCTACAAGTGCGAAGGTTGCAACATGGTGTTTAAAGGGTCCCAAAAGTTTGACGAGCACAAAGAGGTGTGCCACGCGAGTTTCATCTTTACTCCCAAGCAGAAAGTGATGCCGCGATGCATTATTTGCATGAAAGACTTCAGCACGCGTAAAACTTTGAAGCGTCACATCAAGAAGTTCCACACAGATTTCGAAGTCGACGAACTTGCGAACTACGGAACGTCGAAACGAATGTTCGTTGTTGACTGTGAGCAATGCGTGAAGGGTTTTAGTGACGATACAAACATTAACACTTTCAATAGGGTGAAGAACTCCCGCGATTCTCTTGTCTTCAAATGTGATACTTGTGAATCATCCTTCAACTCATTGGAGTTTGCTATACAGCGTCAGAGAGTAACACAACAAGACACTAACAAGTCAAAGATGGTTCTCAGTGAGCTGTGTACCACGCAAATGAGCGATGATGATGAAGAGGCTTCATGCTCAGGGTTTGGCTCGCTGCATGAGTATATGGAACCAGAAAGCACCACTGGCGATGTGAAATTGGAACCCCTGGATCTGGATGAGTATATCAAGTCTGAACCAATGTCCCCGTAA
- Protein Sequence
- MAFMYHNNLDYYCDYCDRAFTRKYNLQTHIENCHNNTSCFCDVCNCKFGSPTGLQLHLSRGHNSFGQSSPECDICGRIFTRKQNITSHMITVHLQGIGPEIRCNICCKVFTSERNLKRHMSQLHNPDVEYPTCDECKKVFKSKNSLVIHLRVAHNGSDNTIRCNLCQKIYTNNRNLKRHMDMFHGKKAEYRCEICPKMYTSNQSLRRHVRTRHDTDIDDLKTDFENRSFMGDIESDIESNDFNNEINAFLCETCNKPFNDEQLLRRHIKLEHSFETFYQYCKNYLQRQNNEEPVVMQMVFKCEFCFSAFLSVYELKDHMKVHHDIEYCLSTCNVCFNKFFSKETMAEHRKICLPPPDVNSCSYCDKLFTDISSLEFHTRIFHPQSQIADSYISSTKDDPTDVCSYKCRHCERMYYSERSLKHHIKLKHTTVEAVQCEYCLKLCSNKYYLASHIKIVHNNETSVKCDYCEKRFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICHKRFESAKSCKIHLKLIHSFNMNTYPCDLCSVSFSSKEALEIHLGTKHLAEDEIYKCEGCNMVFKGSQKFDEHKEVCHASFIFTPKQKVMPRCIICMKDFSTRKTLKRHIKKFHTDFEVDELANYGTSKRMFVVDCEQCVKGFSDDTNINTFNRVKNSRDSLVFKCDTCESSFNSLEFAIQRQRVTQQDTNKSKMVLSELCTTQMSDDDEEASCSGFGSLHEYMEPESTTGDVKLEPLDLDEYIKSEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377315; iTF_00663307; iTF_00119796; iTF_00361845; iTF_01429237; iTF_00686563; iTF_00737679; iTF_01219965; iTF_00632960; iTF_00632945; iTF_01170781; iTF_01170767; iTF_01171650; iTF_01183135; iTF_01100000;
- 90% Identity
- -
- 80% Identity
- -