Etes003711.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- -
- Assembly
- GCA_947507515.1
- Location
- OX382216.1:1793614-1795911[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 6.7e-06 0.00041 20.8 5.6 1 23 11 34 11 35 0.95 2 21 0.011 0.67 10.7 1.9 2 23 41 63 40 63 0.94 3 21 5.9e-06 0.00036 21.0 0.3 2 23 72 94 72 94 0.97 4 21 1.5e-07 9.3e-06 26.0 1.9 2 23 103 125 102 125 0.95 5 21 1.5e-05 0.00094 19.7 0.5 2 23 133 155 133 155 0.97 6 21 8.8e-05 0.0054 17.3 2.4 2 23 163 185 162 185 0.95 7 21 0.0027 0.16 12.7 4.1 1 23 191 214 191 214 0.98 8 21 0.00013 0.0082 16.7 1.1 1 23 249 272 249 272 0.94 9 21 0.0045 0.27 11.9 2.2 1 23 300 322 300 323 0.96 10 21 0.58 36 5.3 0.6 2 21 331 350 330 351 0.93 11 21 0.0048 0.29 11.9 0.8 2 23 360 382 360 382 0.95 12 21 0.011 0.65 10.8 5.8 1 23 405 428 405 428 0.97 13 21 0.00049 0.03 15.0 0.6 2 23 435 457 434 457 0.96 14 21 0.00023 0.014 16.0 3.7 2 23 464 486 464 486 0.95 15 21 0.007 0.43 11.3 2.2 1 23 492 515 492 515 0.97 16 21 0.14 8.3 7.3 6.7 2 23 523 545 523 545 0.95 17 21 0.00057 0.035 14.8 0.1 1 23 552 575 552 575 0.97 18 21 0.031 1.9 9.3 0.9 1 23 582 605 582 605 0.91 19 21 0.016 0.95 10.3 2.7 3 23 620 641 619 641 0.91 20 21 6.9 4.2e+02 1.9 0.1 3 15 663 675 662 678 0.86 21 21 0.61 37 5.2 1.4 1 12 691 702 691 705 0.90
Sequence Information
- Coding Sequence
- ATGGCATTTATGTATCAAAATAACTTAGATTTCTATTGTGACTATTGCGATCGAGCATTCACTAGAAAGTATAATCTCCAAACTCATATAGAAAACTGTCATCATGACAATACCTCATGCTTCTGTGAGATATGCAACTGTAAGTTTGGAAGTCCAGCTGGATTACAGTTGCACCTCTCTCGAGGACACAACAGATTCGGTCAATCATCGCCAGAGTGCGATATTTGCGGCAGAATCTTCACCAGAAAACAAAACATAACATCCCACATGATAACAGTCCATTTACAAGGCATTGGCCCTGAAATCAGATGCAAAATCTGTGATAAAAGTTTCACTTCGCAAAGAAATTTAAAGAGGCATTTGAATCAACTTCACAACCCAGCCGTGGAGTATCCTACTTGCGATGAGTGCAAGAAGATATTCAAAAGCAAAAACTCTTTGGTGGTTCATCTACGAGTGGTCCACAATGAAAATGTGAAACTTATACAATGCGAGCTGTGCCATAAGGCGTACACAAACACCAGAAACCTCAAAAGACACACAGAAATGTACCACGGAAAAAAAGAGGTGCACAGGTGTGAAATTTGTCCTAAAATCCACACTTCTAACCAGAGTTTAAGACGCCACGTCAGAACTAGACACGATCCTGATAATGAAGATGTTAAAACTGATAGCAAATCTATCGTAAATAATATTGAATCTGACGATGGCGATTCCAGTGACTTTAACAATGATATGAACGCATTCTTATGCGAGACTTGCCATAAACCGTTCGATGATGAACAACTGCTCAGACGGCATATAAAGCTAGAACATTCGTTTGAGGTATTCTATCAGTATTGCAAGAATTACCTGCAAAGACTGAACAATGAAGAACCGTTGATAATGCAGACTGTTTTCAAATGTGAGTTTTGTTTCTCGGCTTTTATAAGTGTCTACGAGTTAAAAGACCACATGAAAGAACACCACGATATTGAGTACTGCCTGACCACTTGCAACGTGTGCTTCAATAAGTTTTACAGTAAAGAAACTGTCATGGACCATAGAAAGATTTGCCTGCCACCGCCAAACGTTAACTCTTGCAACTATTGCGACAAACTATTCACTGATATCTCCAGTCTGGAGTTCCACACCAGAATCTTTCATCCGCAATCTCAAATCGCTGATTCTTGCATTTCTTCGACCAAAGATGATTCAGCGGACTTGTGTTCCTACAAATGCCGTCACTGCGGCCGGTTGTACAACAGCGATCGCTCATTGAGACATCACATCAAGTTGAAACATACGGCTATTGAGGCGGTGGAGTGCGAGTACTGCTTAAAAGTCTGCAACAACAGATACTACCTCGCTTCGCATATTAAGATCGTTCACAATAACGCTACATGGGCGAAATGCGACTACTGTGAGAAACATTTCAAATCTAAGCGGAATATTCGCAGACACATCGAATACATGCACATGGGCATGCAAAGATATAAGTGTATAGAATGCGAGACACTTTTCAAAGAGAAACGCAGCTTACGCAAGCATGTCAGGACTAAGCATCCCGATTCTGCCAGCTTTCCGCAATGCCACATCTGCCACAAAAGATTTGAGTCTGCAAAGTCCTGCAAGATCCATCTAAAGTTGATTCACTCGTTCAACATGAACACATACCCTTGCGATCTATGTTCGGTATCGTTCGGCTCCAAAGAAGCGTTAAACATCCATCTAACGACGAAGCATTTAGTTGAAGATGAGATCTATAAGTGTGAAGTTTGCAACGTGGTTTTCAAAGGACCACAAAAGTTCGTCGAGCACAACGAAGTGTGCCATGCTAATTTCACTGCGTACCCTACGGAGAAGGTAGCGCCCAGATGCATTATTTGCATGAAAGACTTCAGCACGCGTAAAACTTTGAAGCGTCACATTAAGAGGTTCCATACTGACTTCGAGGTGGAAGAGCTTGCGAACTACGGATCATGGAAACGGACTTTTATTGTGGACTGCGAGAATTGCGCCAAGGGTTTTAGTGACGAGTTCAACATCAATGTTTTCAATAAAGTCAAACACTTCCGTGATTCTCAAGTCTTCAAATGTGATACTTGTAAAACGTCATTCAACTCTTTGGAGTTCGCTATTCAAAGGCAAAGAGTTACACAGGAAAAATCAGAGATGGTTCTTAGTGAACTTTGTATCACTCAAATGAGTGATGATGATGAGGCTTCTTGTTCTGGATTTGGTTCGCTCCATGAGTATATGGAGCCGGAAAGTACTACGAGTGATTCTAAACTTGAAGCGCTGGATTTAAATGAGTAA
- Protein Sequence
- MAFMYQNNLDFYCDYCDRAFTRKYNLQTHIENCHHDNTSCFCEICNCKFGSPAGLQLHLSRGHNRFGQSSPECDICGRIFTRKQNITSHMITVHLQGIGPEIRCKICDKSFTSQRNLKRHLNQLHNPAVEYPTCDECKKIFKSKNSLVVHLRVVHNENVKLIQCELCHKAYTNTRNLKRHTEMYHGKKEVHRCEICPKIHTSNQSLRRHVRTRHDPDNEDVKTDSKSIVNNIESDDGDSSDFNNDMNAFLCETCHKPFDDEQLLRRHIKLEHSFEVFYQYCKNYLQRLNNEEPLIMQTVFKCEFCFSAFISVYELKDHMKEHHDIEYCLTTCNVCFNKFYSKETVMDHRKICLPPPNVNSCNYCDKLFTDISSLEFHTRIFHPQSQIADSCISSTKDDSADLCSYKCRHCGRLYNSDRSLRHHIKLKHTAIEAVECEYCLKVCNNRYYLASHIKIVHNNATWAKCDYCEKHFKSKRNIRRHIEYMHMGMQRYKCIECETLFKEKRSLRKHVRTKHPDSASFPQCHICHKRFESAKSCKIHLKLIHSFNMNTYPCDLCSVSFGSKEALNIHLTTKHLVEDEIYKCEVCNVVFKGPQKFVEHNEVCHANFTAYPTEKVAPRCIICMKDFSTRKTLKRHIKRFHTDFEVEELANYGSWKRTFIVDCENCAKGFSDEFNINVFNKVKHFRDSQVFKCDTCKTSFNSLEFAIQRQRVTQEKSEMVLSELCITQMSDDDEASCSGFGSLHEYMEPESTTSDSKLEALDLNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856883;
- 90% Identity
- iTF_00737679; iTF_00632960; iTF_00632945;
- 80% Identity
- -