Ader004536.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388286.1:2549718-2552036[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5.1e-06 0.00025 21.4 3.8 1 23 11 34 11 34 0.94 2 21 0.031 1.5 9.5 0.4 2 23 40 62 39 62 0.94 3 21 2.4e-06 0.00012 22.5 0.3 2 23 71 93 71 93 0.97 4 21 4.5e-07 2.3e-05 24.7 1.6 2 23 102 124 101 124 0.96 5 21 1.5e-05 0.00073 20.0 0.5 2 23 132 154 132 154 0.95 6 21 0.00013 0.0064 17.0 1.1 2 23 162 184 161 184 0.95 7 21 7.8e-07 3.9e-05 24.0 1.0 1 23 190 213 190 213 0.98 8 21 0.00018 0.0091 16.5 0.6 1 23 250 273 250 273 0.94 9 21 0.096 4.8 8.0 2.3 1 23 301 323 301 324 0.96 10 21 0.26 13 6.6 0.5 2 21 332 351 331 352 0.94 11 21 0.0049 0.24 12.0 1.3 2 23 361 383 361 383 0.95 12 21 0.007 0.35 11.6 8.0 1 23 405 428 405 428 0.96 13 21 0.00027 0.013 16.0 1.8 2 23 435 457 434 457 0.96 14 21 7.5e-05 0.0038 17.7 2.5 2 23 463 485 463 485 0.95 15 21 0.013 0.64 10.7 1.5 1 23 491 514 491 514 0.97 16 21 0.21 10 6.9 7.1 2 23 522 544 522 544 0.95 17 21 0.0019 0.096 13.3 0.0 1 23 551 574 551 574 0.96 18 21 0.038 1.9 9.3 1.4 1 23 581 604 581 604 0.88 19 21 0.019 0.95 10.2 2.7 3 23 619 640 618 640 0.91 20 21 2.7 1.4e+02 3.4 0.1 3 15 662 674 660 677 0.86 21 21 1.3 63 4.4 0.7 1 12 690 701 690 704 0.89
Sequence Information
- Coding Sequence
- ATGGCACTTATGTATCCAAATAGCTTAGACTTCTTTTGCGATTATTGTGACCGTGCATTCACAAGAAAGTACAATCTCCAAACGCACATCGAAAACTGTCATAACAACACATCTTGCTTTTGCGATATATGTAACAGCAACTTTGGCAGCCCTGCTGGCTTGCAACTACACCTGTCCCGTGGCCACAACAGGTTCGGACAACCTTCACCAGAATGCGATATATGCGGCAGGGTTTTCACCAGAAAACAAAACATTACATCCCACATGATCACCGTCCATCTACAAGGCATCGGACCAGAAATCAAATGCAAAATTTGCAGCAAAGTATTCACTACAGAGAGGAATCTGAAGAGGCATATGAATCAACTGCACAATCCTGACGTGGAGTACCCTACTTGCAACGGTTGCAAAAAGGTCTTCAAGAGCAAGAACTCCTTGGTTGTTCATTTACGAGCGGTTCACACGGGAAGCGATAAAGCTATAAGATGCGAGCTTTGCTTGAAAGTATACACGAACAACAGAAATCTTAAGAGACATACAGAAATGTTTCACGGCCAGAAGGCGGAATACAGATGCGAAATTTGTCCGAAAATCTACACCTCCAATCAGAGTTTACGACGCCATGTGAGAACCACACACGATGCTGATATCGATGATCAGATCAAGCAAACTGATAGTAATCCTATCATAGATAACATTGAAACTGATGATTCCAGTGACAGAGACTTCAACAATGAAATGAACGCTTTCCTATGCGAGACTTGCAGCAAACCGTTCAACAGCGAACAACTGCTCAGACGCCACATTAAGCTCGACCATTCGTTCGAAACATTTTATCAGTACTGCAAGAATTACTTGCAAAGGCAAAACAATGAAGAACCGATCGCAATGCAGCTGGTTTACAAATGCGAGTTTTGTTTTTCAGCGTTTTTAAGTGTCTACGAGCTGAAGGACCACATGAAGGTCCACCACGATATCGAGTACTGCCTATCAACTTGCAATGTCTGCTTCAATAAGTTCTACAGTAAGGAAACCATGGCGGAGCATAGGAGGATATGCTTGCCTCCGCCAGGCGTCAACTCCTGCAAATATTGCGACAAACTCTTCACAGACATCTCTAGTTTACAGTTCCACACGAGGATCTTCCATCCGCAATCTCAAATCGCCGACTCTTACATATCATCGACTAAAGACGACCCGAGCGATGTGTGCCACAAATGCCGCCACTGCGATCGGGTGTACTACAGCGAACGCTCTCTGAAGCACCACATCAAGCTGAAACACACTACTGTAGAGGCGGTAGAGTGCGGGCACTGCTCAAAGGTCTGCAACAACAAGTACTACCTCGCTTCGCATATCAAGATCGTCCACAACGACACCTGGGCCAAATGCGACTATTGCGAAAAGCGATTCAAATCGAAGAGGAACATTCGCAGGCACATCGAATACACGCACATGGGCATGCAAAGATACAAGTGCATCGAATGCGAGACCCTATTCAAAGAAAAACGCAGCTTGCGCAAGCATGTCCGCGTCAAGCATCCCAACTCTGCCAGCTTCCCGCAGTGCCACATCTGTCACAAACGATTCGAGTCCGCAAAGTCCTGTAAAATACATCTAAAGCTACTTCACTCGTTCAACATGAACACGTATCCATGCGATCTGTGTTCGGTATCGTTCGGTTCGAAGGAAGCTCTGGAGATCCACTTGGGAACCAAACACCTGGCCAAAGATGAGATCTACAAGTGCGAAGATTGCAACCTGGTGTTCAAAGGACCGCAGAAGTTCGACGAGCACAACGAAGTGTGCCACGCGAATTTCGTCCCTAATCCGAAGCAGAAGGCGATGCCGCGATGCATTATTTGCATGAAAGACTTCAGCACGCGCAAGACGCTAAAGCGTCACATCAAGAAGTTCCATACAGATTTCGAGGTAGAAGAGCTCGAAAACTACGGCTCGTGGAAGCGTACATTCATTATAGACTGCGATAAATGCGTTAAAGGCTTCACTGACGAAACTAACATAAACATCTTCAATAGAGTTAAACACTCCCGCGACTCGCAAGTGTTCAAATGCGAGGATTGTCAGTCATCGTTCAACTCTCTGGAGTTCGCTATACAACGCCAGAGGGTTACGCAGGAGAAGTCCGAGATGGTGCTCAGTGAGTTGTGCACCACGGAGATGAGCGATGAGGAGGCTCCATGCTCTGGGTTCGGCTCGCTGCATGAGTACATGGAACCGGAGAGTACCACAGCCGATTTAAAACTAGAGCCTGTAGATCTGGACGACTATATCAAGGCAGAACCTATGTCCCCTTAA
- Protein Sequence
- MALMYPNSLDFFCDYCDRAFTRKYNLQTHIENCHNNTSCFCDICNSNFGSPAGLQLHLSRGHNRFGQPSPECDICGRVFTRKQNITSHMITVHLQGIGPEIKCKICSKVFTTERNLKRHMNQLHNPDVEYPTCNGCKKVFKSKNSLVVHLRAVHTGSDKAIRCELCLKVYTNNRNLKRHTEMFHGQKAEYRCEICPKIYTSNQSLRRHVRTTHDADIDDQIKQTDSNPIIDNIETDDSSDRDFNNEMNAFLCETCSKPFNSEQLLRRHIKLDHSFETFYQYCKNYLQRQNNEEPIAMQLVYKCEFCFSAFLSVYELKDHMKVHHDIEYCLSTCNVCFNKFYSKETMAEHRRICLPPPGVNSCKYCDKLFTDISSLQFHTRIFHPQSQIADSYISSTKDDPSDVCHKCRHCDRVYYSERSLKHHIKLKHTTVEAVECGHCSKVCNNKYYLASHIKIVHNDTWAKCDYCEKRFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRVKHPNSASFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSKEALEIHLGTKHLAKDEIYKCEDCNLVFKGPQKFDEHNEVCHANFVPNPKQKAMPRCIICMKDFSTRKTLKRHIKKFHTDFEVEELENYGSWKRTFIIDCDKCVKGFTDETNINIFNRVKHSRDSQVFKCEDCQSSFNSLEFAIQRQRVTQEKSEMVLSELCTTEMSDEEAPCSGFGSLHEYMEPESTTADLKLEPVDLDDYIKAEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856883;
- 90% Identity
- -
- 80% Identity
- -