Ptra012530.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004342.1:29416264-29418591[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.5e-06 0.00025 22.4 5.0 1 23 11 34 11 34 0.95 2 21 0.00046 0.045 15.3 0.2 2 23 40 62 39 62 0.94 3 21 7e-06 0.00069 21.0 0.3 2 23 71 93 71 93 0.97 4 21 5.4e-07 5.3e-05 24.5 2.8 2 23 102 123 101 123 0.96 5 21 0.00053 0.052 15.1 0.3 2 23 131 153 131 153 0.95 6 21 3e-05 0.003 19.0 2.0 2 23 161 183 160 183 0.95 7 21 7.7e-07 7.5e-05 24.0 1.7 1 23 189 212 189 212 0.98 8 21 0.00052 0.051 15.1 0.4 1 23 244 267 244 267 0.93 9 21 0.14 14 7.5 2.3 1 23 295 317 295 318 0.96 10 21 0.69 68 5.3 0.5 2 21 326 345 325 346 0.93 11 21 0.065 6.4 8.5 1.1 2 23 355 377 355 377 0.93 12 21 0.032 3.2 9.5 7.9 1 23 400 423 400 423 0.95 13 21 3.3e-05 0.0033 18.9 0.6 3 23 431 452 430 452 0.97 14 21 7.6e-05 0.0075 17.7 2.5 2 23 459 481 459 481 0.95 15 21 0.0083 0.82 11.3 2.2 1 23 487 510 487 510 0.97 16 21 0.076 7.5 8.3 4.7 2 23 518 540 518 540 0.95 17 21 6.5e-05 0.0064 18.0 0.2 1 23 547 570 547 570 0.97 18 21 0.011 1 11.0 2.1 1 23 577 600 577 600 0.93 19 21 0.036 3.6 9.3 2.1 5 23 617 636 614 636 0.89 20 21 8.6 8.5e+02 1.8 0.2 3 14 658 669 657 671 0.86 21 21 3 2.9e+02 3.3 1.4 1 12 686 697 686 700 0.90
Sequence Information
- Coding Sequence
- ATGGCACAAATGTATCAAAATTATTTAGACTACTATTGCGACTATTGCAACCGCTCATTTACTAGAAAGTACAATCTCCAAACTCATATAGAAAACTGTCATATAAATACATCTTGCTCTTGTGAAATATGCGACCAAAAATTCGGGAGCCCAGCTGGTTTACAAGTACACCTTTCACGAGGCCACAACAGATTTAGTCAACCTTCTCCAGAATGCGATATTTGTGGCAGAATTTTCACtagaaaacaaaatataacatCTCATATGATCACCGTCCATCTCCAAGGCATTGGTCCTGAGATCAGATGCAAAATATGCGATAAAGTGTTCACTACAGAACGGAATTTGAAGAGGCACATGCACCTCCATAATCCAAACGTTGCGTATCCTACCTGCGACGTGTGTAATAGAGTTTTCAAGAGCAAACCAGCTTTAGTATCCCATTTCCAATCAGTTCATAACAGAAGcgacaaaattttaaaatgtaaccttTGCCAAAGGGTCTACACAAACAGCAGAAATCTCAAGAGGCATACCGAGATGTTTCACGGTGAAAAGGAGGAATACAGATGCGAAATTTGCCCTAAGACTTACACTTCCAATCAGAGTTTAAGACGGCACGTCAAAACTAGACATGATACTGACATTGATGatttaaaaacagaaaacaCATCTAAGGAAAGTGATGACAATAATGATTCAGATGAGTTCAACAATGAAATGAACGCTTTCTTATGCGAATCTTGCAATAAACCGTTTAATGATGAACAACTACTCAGACAGCATATAAAACTGGACCATTCCTTTGAAACATTCTATCAATACTGCAAGAATTACTTACAAAGGCAAAATAATGATGAACCAATTGTAATGCAGCTGGTTTTCAAATGTGAGTTTTGTTTCTCGGCTTTTCTGAGCGTATACGAACTAAAAGATCACATGAAGGTACACCATGATATAGAGTACTGTCTGTCAACTTGCAACGTTTGTTTTAACAAGTTTTATAGTAAAGAGACTGTGATGGAGCATAGAAAGATATGCCTGCCTCCGCCGAACGTTAACTCTTGCAACTTCTGTGATAAACTGTTTACGGATATCTCCAGTCTTGAGTTCCACACGAAAATTTTTCACCCTCAATCCCAAATTGCCGATTCTTCAATAAGTTCGACTAAAGACGACCCGAATGATATACGTTCGTACAAATGCCGGCATTGCGATCGAATGTATTACAGCGAACGTTCTCTCAAACATCATTTCAAATTGAAACACACTACTATTGAGGCTGTAGATTGTGGATATTGCGGTAAAGTATGCAACAATAAGTACTATCTCGCCTCCCACATCAAGATCGTCCATAATAATGGCACTTCGGCCAAATGCGACTATTGCGAGAAGCGATTCAAATCTAAAAGGAATATTCGTAGGCACATCGAGTACACACACATGGGGATGCAGAGATACAAGTGCATCGAATGTGAAACTCTTTTCAAAGAGAAACGCAGCTTGCGCAAACATGTCCGAACAAAACACCCTGACTCGGCATGCTTTCCACAATGCCACATTTGCCAGAAAAGATTCGAGTCCGCAAAGTCTTGTAAAATACATCTAAAGCTTATACACTCAATCAACATGAACACTTACCCTTGCGATCTGTGCTCTGTCTCGTTCAGCTCAAAAGAAGCCTTGCAAATCCACTTAACGACCAAACATTTGGCCGAAGACGCAATCTACAAATGTGAAGACTGCAATTTGGTCTTCAAAGGGTCGCAGAAGTTCGAGGAGCACAATGAAATGTGCCACGGGAATTTCGACCCTAATCCGAAGGAGAAAATGCTTCCCCGGTGCATTATTTGCATAAAAGATTTCAGTTCACGGAAGACACTAAGGCGTCACATCAAGAAATTCCACACAGATTTCGAGATTGAAGAGCTTGCGAACTACGGCTCTGCGAAAAGGTATTCCATTGTGGACTGTGAGGATTGCATTAAGAGCTTCACACACGAAAATAACATCGACACATACAATAAAGCCAAACACTTGCGCGATTCTCGAATATTCAAGTGTAACACTTGCAAATCGTCTTTTAATACCTTGGAGTTTGCTATACAACGGCAGAAGGCCATGCTAGATTCAAAGTCGAAAATGGTTCTTAGCGAGCTGTGTACTACGCAGATGAGCGATGATGGAGATGAGAAGGCTTCGTGCTCTGGGTTCGGATCTCTGCATGAGTACATGGAACCAGAAAGTACCACAGGTGATGTTAAACTGGAGCCTATAGATCTTGATGAAGATGTTATGGAAATTAAGACGGAACCAACGACTCCATAA
- Protein Sequence
- MAQMYQNYLDYYCDYCNRSFTRKYNLQTHIENCHINTSCSCEICDQKFGSPAGLQVHLSRGHNRFSQPSPECDICGRIFTRKQNITSHMITVHLQGIGPEIRCKICDKVFTTERNLKRHMHLHNPNVAYPTCDVCNRVFKSKPALVSHFQSVHNRSDKILKCNLCQRVYTNSRNLKRHTEMFHGEKEEYRCEICPKTYTSNQSLRRHVKTRHDTDIDDLKTENTSKESDDNNDSDEFNNEMNAFLCESCNKPFNDEQLLRQHIKLDHSFETFYQYCKNYLQRQNNDEPIVMQLVFKCEFCFSAFLSVYELKDHMKVHHDIEYCLSTCNVCFNKFYSKETVMEHRKICLPPPNVNSCNFCDKLFTDISSLEFHTKIFHPQSQIADSSISSTKDDPNDIRSYKCRHCDRMYYSERSLKHHFKLKHTTIEAVDCGYCGKVCNNKYYLASHIKIVHNNGTSAKCDYCEKRFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPDSACFPQCHICQKRFESAKSCKIHLKLIHSINMNTYPCDLCSVSFSSKEALQIHLTTKHLAEDAIYKCEDCNLVFKGSQKFEEHNEMCHGNFDPNPKEKMLPRCIICIKDFSSRKTLRRHIKKFHTDFEIEELANYGSAKRYSIVDCEDCIKSFTHENNIDTYNKAKHLRDSRIFKCNTCKSSFNTLEFAIQRQKAMLDSKSKMVLSELCTTQMSDDGDEKASCSGFGSLHEYMEPESTTGDVKLEPIDLDEDVMEIKTEPTTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856883;
- 90% Identity
- -
- 80% Identity
- -