Paff003132.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560186.1:15690254-15692584[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.7e-06 0.00024 21.8 6.3 1 23 11 34 11 34 0.95 2 19 0.011 0.7 10.9 1.6 2 23 40 62 39 62 0.94 3 19 6.8e-06 0.00044 21.0 0.3 2 23 71 93 71 93 0.97 4 19 1.6e-07 1.1e-05 26.1 0.5 2 23 102 124 101 124 0.96 5 19 0.0056 0.36 11.8 1.2 2 23 132 154 132 154 0.91 6 19 4e-06 0.00026 21.7 1.2 2 23 162 184 161 184 0.96 7 19 2e-06 0.00013 22.7 1.1 1 23 190 213 190 213 0.98 8 19 6.3e-06 0.00041 21.1 0.8 1 23 247 270 247 270 0.94 9 19 0.027 1.8 9.7 2.1 1 23 298 320 298 321 0.96 10 19 3.1 2e+02 3.2 0.5 3 21 330 348 328 349 0.90 11 19 0.011 0.71 10.9 2.3 2 23 358 380 358 380 0.95 12 19 0.014 0.93 10.5 8.6 1 23 403 426 403 426 0.96 13 19 0.00013 0.0084 17.0 0.6 2 23 433 455 432 455 0.96 14 19 5.9e-05 0.0038 18.1 2.4 2 23 462 484 461 484 0.94 15 19 0.012 0.75 10.8 2.3 1 23 490 513 490 513 0.97 16 19 1 66 4.7 6.3 2 23 521 543 521 543 0.95 17 19 0.0005 0.032 15.1 0.2 1 23 550 573 550 573 0.97 18 19 0.0091 0.59 11.2 0.1 1 19 580 598 580 601 0.94 19 19 0.019 1.2 10.2 2.7 3 23 618 639 617 639 0.91
Sequence Information
- Coding Sequence
- ATGTCACTTATGTATCCAAATAACTTAGACTACTACTGCGATCACTGTGACCGTTCATTCACTAGGAAGTACAATCTCCAAACCCATATAGAAAACTGTCATATCAACGCTTCTTGCTTTTGTCAAGTATGCGACCATAAATTCGGGAGCCCTGCTGGCTTACAATTGCACCTGTCCCGGGGACACAATAGATTCGGTCAGCCTTCCCCAGAATGCGATATTTGCGGAAGGATTTtcacaagaaaacaaaatattacatcTCACATGATTACAGTCCATCTACAAGGCGTTGGACCAGAAATACGCTGTAATATTTGCGATAAGGTTTTCAGTACTGAAAGAAATCTGAAGAGACATTTGAATGTACTGCACAACCCAGATGTAGCATACCCTACTTGTGATGCGTGTAAGAAAATCTTCAAAAGCAAGCACTCTTTAGTTGCTCACTTTCAAGCAGTCCACAATGCGATCGACAAAATAATTAGATGCAATCTCTGCCAGAAGGTCTACACAAACAACAGGAACCTGAAGAGACACATCGAGATGTTTCACGGTGAAAAGGCGGAATACAGATGCGAAATCTGCCCTAAAATCTACACTTCTAATCAAAGCTTAAGACGTCACGTCAAAACAAGACACGATACTGATAATTACGATCTGAAACTTGATAACAAATCTATGGATGTTGAAACAGATGGTGATGAAGACTCCGATGAGTTCAATAATGATTTGAATGCTTTCCTATGCGAGACTTGCAACAAGCCTTTCAGTGATCAAAAACAACTCAGACAACATATAAAACTGGAACACTCGTTTGATACATACTACCAGTACTGCAAGAATTACTTGCAAAGAATGGCTGACGCAGAGCCGGTCGTGTCTCATCTGGTTTTCAAATGCGAGTTTTGTTTCTTGGCGTTTTTAAGCGTCTACGAACTAAAAGATCACATGAAAGTACATCACGATATCGAGTACTGTCTGTCGAATTGCAACGTGTGCTTTAATAAGTTTTACAGTAAAGAGACCATAATGGAGCATAAAAAGATATGCCTTCCACCGCCGAACGTAAACACTTGCAACCACTGCGATAAACTGTTCACGGATATCTCCAGTCTGGAGTTTCACACGAGGATCTTTCATCCACAATCTCAAATCGCCGATTCTTGCATATCTTCGACGAATAACGACCCCACCGATATGTGTTCGTACAAATGCCATCATTGTGATAGAATGTACTACAGCGACCGCTCTCTGAAACATCACGTCAAGCTGAAACACACGGCTGTTGAGGCAGTTGAGTGCGAATATTGCGGAAAACTCTGCAACAACAAGTACTATCTCGCTTCGCACATCAAGATAGTCCATAATAATGCCACTTGGTCCAAATGCGATTACTGCGAGAAGCGATTCAAATCGAAGAGAAATATTCGTAGACACATTGAATATACACATATGGGAATGCAGAGGTTCAAGTGTATAGAATGTGAGACTCTTTTCAAAGAGAAGCGCAGTTTGCGCAAACATGTCCGAACAAAGCACCCTAACTCCGTCTGCTTCCCTCAATGCCATATTTGTCACATGCGGTTCGAGTCTGCCAAGTCTTGTAAAATACATCTAAAGCTACTTCACTCGTTCAACATGAACACATATCCCTGCGACCTCTGTTCCGTATCGTTCGGCTCCAAAGAAGCCTTAAAGATCCATCTAACAACCAAACATTTGGCCGAAGATGAGATCTACAAATGCGAGGAGTGTAATATGGTGTTCAAAGGTCCGCAAAAGTTTGAAGAGCACAACGAAGTGTGTCTCGCGAATTTCGACTGTACACCGAAGCAGAAACTGATGCCTAGATGCATTATTTGCATGAAGGACTTCAGTACACGGAAGACGTTGAAACGTCATATTAAGAAGTTCCACGCTGATTTCGAGGTGGACGAATTAGCTAACTACGGATCGTGGAAACGGACATTTACCGTAGATTGTGAGGATTGCATCAAGAGTTTCACGGAGGATTACAACATCACCGTCTACAATCGAGTTAAACACTCCCGCGATGCCTTGGTATTCAAGTGCTCTGCTTGTAAATCTTCATACAACACTTTGGAGTTCGCAATACAATGCCACAAGGCCACGCATGAAACGAGATCGAAAATGGTTCTGAGTGAGCTATGCACCACGCAAATGAGCGATGATGATGAAGCCTCGTGCTCAGGGCTCGGGTCGCACGAGTACATGGAACCTGAAAGTACTACAGGTGACGTAAAGCTTGAACCTCTAGACCTGGATGAAGATAACGTGGATATAAAGGAAGAATCATTGTCACCCTATTGA
- Protein Sequence
- MSLMYPNNLDYYCDHCDRSFTRKYNLQTHIENCHINASCFCQVCDHKFGSPAGLQLHLSRGHNRFGQPSPECDICGRIFTRKQNITSHMITVHLQGVGPEIRCNICDKVFSTERNLKRHLNVLHNPDVAYPTCDACKKIFKSKHSLVAHFQAVHNAIDKIIRCNLCQKVYTNNRNLKRHIEMFHGEKAEYRCEICPKIYTSNQSLRRHVKTRHDTDNYDLKLDNKSMDVETDGDEDSDEFNNDLNAFLCETCNKPFSDQKQLRQHIKLEHSFDTYYQYCKNYLQRMADAEPVVSHLVFKCEFCFLAFLSVYELKDHMKVHHDIEYCLSNCNVCFNKFYSKETIMEHKKICLPPPNVNTCNHCDKLFTDISSLEFHTRIFHPQSQIADSCISSTNNDPTDMCSYKCHHCDRMYYSDRSLKHHVKLKHTAVEAVECEYCGKLCNNKYYLASHIKIVHNNATWSKCDYCEKRFKSKRNIRRHIEYTHMGMQRFKCIECETLFKEKRSLRKHVRTKHPNSVCFPQCHICHMRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSKEALKIHLTTKHLAEDEIYKCEECNMVFKGPQKFEEHNEVCLANFDCTPKQKLMPRCIICMKDFSTRKTLKRHIKKFHADFEVDELANYGSWKRTFTVDCEDCIKSFTEDYNITVYNRVKHSRDALVFKCSACKSSYNTLEFAIQCHKATHETRSKMVLSELCTTQMSDDDEASCSGLGSHEYMEPESTTGDVKLEPLDLDEDNVDIKEESLSPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856883;
- 90% Identity
- iTF_01170767; iTF_01171650;
- 80% Identity
- iTF_01170767;