Paff003132.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560186.1:15690254-15692584[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.021 60 4.2 2.7 18 43 12 34 8 35 0.93 2 18 0.00025 0.7 10.4 0.1 18 43 71 93 68 94 0.87 3 18 1.5e-05 0.042 14.3 0.4 17 43 101 124 99 125 0.91 4 18 0.085 2.4e+02 2.3 1.1 18 43 132 154 131 155 0.76 5 18 2.3e-07 0.00064 20.2 2.8 5 43 148 184 145 185 0.92 6 18 0.00022 0.61 10.6 0.4 18 43 191 213 186 214 0.91 7 18 0.047 1.3e+02 3.2 0.0 16 44 246 271 238 271 0.84 8 18 5.9 1.6e+04 -3.6 0.1 14 22 295 303 292 304 0.74 9 18 5.9 1.7e+04 -3.6 0.4 19 29 330 340 329 343 0.75 10 18 0.0085 24 5.5 0.0 15 27 355 367 351 381 0.80 11 18 5 1.4e+04 -3.3 7.4 17 43 403 426 395 427 0.83 12 18 0.51 1.4e+03 -0.2 4.7 16 29 431 444 426 456 0.77 13 18 0.0038 11 6.7 4.0 13 43 457 484 447 485 0.78 14 18 0.019 53 4.4 0.6 17 44 490 514 486 514 0.85 15 18 4.9 1.4e+04 -3.3 1.0 18 25 521 528 520 535 0.80 16 18 1.1 3.1e+03 -1.3 0.1 34 43 564 573 552 574 0.81 17 18 4.4e-06 0.012 16.1 1.7 7 43 606 639 604 640 0.90 18 18 1.7 4.7e+03 -1.8 0.2 10 27 682 699 680 700 0.81
Sequence Information
- Coding Sequence
- ATGTCACTTATGTATCCAAATAACTTAGACTACTACTGCGATCACTGTGACCGTTCATTCACTAGGAAGTACAATCTCCAAACCCATATAGAAAACTGTCATATCAACGCTTCTTGCTTTTGTCAAGTATGCGACCATAAATTCGGGAGCCCTGCTGGCTTACAATTGCACCTGTCCCGGGGACACAATAGATTCGGTCAGCCTTCCCCAGAATGCGATATTTGCGGAAGGATTTtcacaagaaaacaaaatattacatcTCACATGATTACAGTCCATCTACAAGGCGTTGGACCAGAAATACGCTGTAATATTTGCGATAAGGTTTTCAGTACTGAAAGAAATCTGAAGAGACATTTGAATGTACTGCACAACCCAGATGTAGCATACCCTACTTGTGATGCGTGTAAGAAAATCTTCAAAAGCAAGCACTCTTTAGTTGCTCACTTTCAAGCAGTCCACAATGCGATCGACAAAATAATTAGATGCAATCTCTGCCAGAAGGTCTACACAAACAACAGGAACCTGAAGAGACACATCGAGATGTTTCACGGTGAAAAGGCGGAATACAGATGCGAAATCTGCCCTAAAATCTACACTTCTAATCAAAGCTTAAGACGTCACGTCAAAACAAGACACGATACTGATAATTACGATCTGAAACTTGATAACAAATCTATGGATGTTGAAACAGATGGTGATGAAGACTCCGATGAGTTCAATAATGATTTGAATGCTTTCCTATGCGAGACTTGCAACAAGCCTTTCAGTGATCAAAAACAACTCAGACAACATATAAAACTGGAACACTCGTTTGATACATACTACCAGTACTGCAAGAATTACTTGCAAAGAATGGCTGACGCAGAGCCGGTCGTGTCTCATCTGGTTTTCAAATGCGAGTTTTGTTTCTTGGCGTTTTTAAGCGTCTACGAACTAAAAGATCACATGAAAGTACATCACGATATCGAGTACTGTCTGTCGAATTGCAACGTGTGCTTTAATAAGTTTTACAGTAAAGAGACCATAATGGAGCATAAAAAGATATGCCTTCCACCGCCGAACGTAAACACTTGCAACCACTGCGATAAACTGTTCACGGATATCTCCAGTCTGGAGTTTCACACGAGGATCTTTCATCCACAATCTCAAATCGCCGATTCTTGCATATCTTCGACGAATAACGACCCCACCGATATGTGTTCGTACAAATGCCATCATTGTGATAGAATGTACTACAGCGACCGCTCTCTGAAACATCACGTCAAGCTGAAACACACGGCTGTTGAGGCAGTTGAGTGCGAATATTGCGGAAAACTCTGCAACAACAAGTACTATCTCGCTTCGCACATCAAGATAGTCCATAATAATGCCACTTGGTCCAAATGCGATTACTGCGAGAAGCGATTCAAATCGAAGAGAAATATTCGTAGACACATTGAATATACACATATGGGAATGCAGAGGTTCAAGTGTATAGAATGTGAGACTCTTTTCAAAGAGAAGCGCAGTTTGCGCAAACATGTCCGAACAAAGCACCCTAACTCCGTCTGCTTCCCTCAATGCCATATTTGTCACATGCGGTTCGAGTCTGCCAAGTCTTGTAAAATACATCTAAAGCTACTTCACTCGTTCAACATGAACACATATCCCTGCGACCTCTGTTCCGTATCGTTCGGCTCCAAAGAAGCCTTAAAGATCCATCTAACAACCAAACATTTGGCCGAAGATGAGATCTACAAATGCGAGGAGTGTAATATGGTGTTCAAAGGTCCGCAAAAGTTTGAAGAGCACAACGAAGTGTGTCTCGCGAATTTCGACTGTACACCGAAGCAGAAACTGATGCCTAGATGCATTATTTGCATGAAGGACTTCAGTACACGGAAGACGTTGAAACGTCATATTAAGAAGTTCCACGCTGATTTCGAGGTGGACGAATTAGCTAACTACGGATCGTGGAAACGGACATTTACCGTAGATTGTGAGGATTGCATCAAGAGTTTCACGGAGGATTACAACATCACCGTCTACAATCGAGTTAAACACTCCCGCGATGCCTTGGTATTCAAGTGCTCTGCTTGTAAATCTTCATACAACACTTTGGAGTTCGCAATACAATGCCACAAGGCCACGCATGAAACGAGATCGAAAATGGTTCTGAGTGAGCTATGCACCACGCAAATGAGCGATGATGATGAAGCCTCGTGCTCAGGGCTCGGGTCGCACGAGTACATGGAACCTGAAAGTACTACAGGTGACGTAAAGCTTGAACCTCTAGACCTGGATGAAGATAACGTGGATATAAAGGAAGAATCATTGTCACCCTATTGA
- Protein Sequence
- MSLMYPNNLDYYCDHCDRSFTRKYNLQTHIENCHINASCFCQVCDHKFGSPAGLQLHLSRGHNRFGQPSPECDICGRIFTRKQNITSHMITVHLQGVGPEIRCNICDKVFSTERNLKRHLNVLHNPDVAYPTCDACKKIFKSKHSLVAHFQAVHNAIDKIIRCNLCQKVYTNNRNLKRHIEMFHGEKAEYRCEICPKIYTSNQSLRRHVKTRHDTDNYDLKLDNKSMDVETDGDEDSDEFNNDLNAFLCETCNKPFSDQKQLRQHIKLEHSFDTYYQYCKNYLQRMADAEPVVSHLVFKCEFCFLAFLSVYELKDHMKVHHDIEYCLSNCNVCFNKFYSKETIMEHKKICLPPPNVNTCNHCDKLFTDISSLEFHTRIFHPQSQIADSCISSTNNDPTDMCSYKCHHCDRMYYSDRSLKHHVKLKHTAVEAVECEYCGKLCNNKYYLASHIKIVHNNATWSKCDYCEKRFKSKRNIRRHIEYTHMGMQRFKCIECETLFKEKRSLRKHVRTKHPNSVCFPQCHICHMRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSKEALKIHLTTKHLAEDEIYKCEECNMVFKGPQKFEEHNEVCLANFDCTPKQKLMPRCIICMKDFSTRKTLKRHIKKFHADFEVDELANYGSWKRTFTVDCEDCIKSFTEDYNITVYNRVKHSRDALVFKCSACKSSYNTLEFAIQCHKATHETRSKMVLSELCTTQMSDDDEASCSGLGSHEYMEPESTTGDVKLEPLDLDEDNVDIKEESLSPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856883;
- 90% Identity
- iTF_01170781;
- 80% Identity
- iTF_01170781;