Echr024532.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595860.1:5163365-5165701[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.9e-06 0.0002 22.4 5.0 1 23 11 34 11 34 0.95 2 20 0.0015 0.1 13.8 0.4 2 23 40 62 39 62 0.94 3 20 7.9e-06 0.00054 21.0 0.3 2 23 71 93 71 93 0.97 4 20 3.1e-06 0.00021 22.3 2.8 2 23 102 124 101 124 0.95 5 20 0.00098 0.066 14.4 3.6 2 23 132 154 132 154 0.96 6 20 1.9e-05 0.0013 19.8 1.7 2 23 162 184 161 184 0.95 7 20 2.3e-06 0.00016 22.7 1.1 1 23 190 213 190 213 0.98 8 20 0.00023 0.016 16.4 0.6 1 23 248 271 248 271 0.94 9 20 0.16 11 7.5 2.3 1 23 299 321 299 322 0.96 10 20 0.19 13 7.2 0.6 2 21 330 349 329 350 0.93 11 20 0.0065 0.44 11.8 0.8 2 23 359 381 359 381 0.95 12 20 0.0023 0.16 13.2 6.8 1 23 404 427 404 427 0.97 13 20 0.00015 0.01 17.0 0.6 2 23 434 456 433 456 0.96 14 20 6.9e-05 0.0047 18.0 2.4 2 23 463 485 462 485 0.94 15 20 0.0095 0.64 11.3 2.2 1 23 491 514 491 514 0.97 16 20 0.087 5.9 8.3 4.7 2 23 522 544 522 544 0.95 17 20 5.6e-05 0.0038 18.3 0.2 1 23 551 574 551 574 0.97 18 20 0.0074 0.51 11.7 0.1 1 19 581 599 581 602 0.94 19 20 0.022 1.5 10.2 2.7 3 23 619 640 618 640 0.91 20 20 4.5 3.1e+02 2.9 1.9 1 12 690 701 690 704 0.90
Sequence Information
- Coding Sequence
- ATGGCACTAATGTATCAAAATAACTTAGACTATTATTGTGATTACTGCAACCGCTCATTCACTAGAAAGTACAATCTCCAAACCCACATTGAAAACTGCCATATAAACACATCTTGTTTCTGTGATATATGTGACTATAAGTTCGGGAGCCCTGCTGGGTTACAATTGCACCTCTCTCGAGGACACAACAGATTCGGTCAACCATCCCCAGAATGCGATATTTGCGGCAGAATTTTCAcaagaaaacaaaatattacttcTCACATGATCACAGTTCATCTACAAGGCGTTGGACCTGAAATAAGGTGCAAAGTCTGCCATAAAATATTTACGACAGAAAGGAATCTGAAGAGGCATATGAACTTACTGCACAACCCTGATGTTGCGTATCCTACTTGCGATGCGTGTAAAAAGGTTTTCAAGAGCAAACACTCCTTGCTAGCTCACTTGCACACAGTTCACAATGGAAGTAACAAACTTATAAGATGCAACCTATGTCAAAAGGTCTACACAAATAACAGAAATCTCAAGAGGCATACTGAGATGTTCCATGGTGAAAAGGCAGAATATAGATGCGAAATCTGTCCTAAAATCTACACTTCTAATCAGAGTTTAAGGCGCCACGTCAAAACTAGACACGATACTGATATTGACGATCTAAAAACTGATTGCAAAGTTATAATGGACAACGTtgaaagtgatgatgatgattgtgatgatttaaacaatgaaattAACGGTTTCTTATGCGAAACTTGTAACAAGCTGTTTAGCGATGAACAACTGCTTAGACGGCATATAAAACTGGGCCATTCGTTTGAAACATTCTATAAATACTGCAAAAGTTACTTGCAAAGGCAGACCAATGCAGAACCGGTTGTTTTGCAGCTGGTTTTCAAATGCGAGTTTTGTTTCTCTGCTTTTCTGAGCGTCTACGAGCTCAAAGATCACATGAAAGTGCACCATGATATCGAGTACTGTCTGTCAACTTGCAACGTGTGCTTCAACAAGTTTTACAGTAAAGAAACCTTGGTGGAGCATAAGAAAATATGCCTGCCACCGCCGAACGTTAACTCATGCAACTACTGCGACAAACTGTTTACTGATATCTCCAGTCTGGAGTTTCACACCAGAATATTTCATCCGCAATCCCAAATTGCCGATTCTTTCATATCTTCGACTAAAGACGACACGAAAGATGTGTGTTCGTACAAATGTCGTCACTGCGATCGGATGTATTACAGCGAGCGCTCACTGAAACATCATATCAAACTGAAACACACGGCCGTCGAGGCGGTAGAGTGCGAATATTGCGGAAAGCTTTGCAACAACAAGTATTATCTCGCTTCGCATATCAAGATCGTCCACAATAATGATACTTGGTCTAAATGCGACTATTGCGAAAAGAGATTCAAATCGAAAAGAAATATTCGTAGGCACATCGAATATACACACATGGGAATGCAGAGATACAAGTGCATCGAATGCGAGACTCTCTTCAAAGAGAAACGCAGCTTGCGCAAACATGTCCGGACTAAGCACCCTAACTCGACCTGTTTTCCACAATGCCACATTTGCCAAAAACGATTCGAGTCAGCAAAGTCTTGTAAAATACATCTAAAGCTAATTCACTCGTTCAACATGAACACATACCCTTGCGATTTGTGTTCCGTTTCGTTTAGTTCCAAGGAAGCTTTAAAGATCCACCTAGAGACTAAACACTTGGCCGAAGATGAGATCTACAAATGTGAAGACTGCAACATGGTGTTCAAAGGACCCCAAAAGTTCGAAGACCACAACGAAGTGTGTCAAGTGAATTTCGTCACTAATCCCAATCAAAAATCGCTGCCGCGATGCATTATTTGCATGAAAGACTTCAGCACGCGGAAGACGTTGAAGCGTCACATCAAGAAGTTCCACACAGACTTCGAAGTAGAGGAGCTTGCTAACTACGCATCCTGGAAAAGGACTTTCACCGTGGACTGCGAGGACTGCATCAAGGGTTTCACTAACGATTTCAACATCAACACCTACAATAGAGTTAAACAATCCCGAGATTCTAAAGTATTCAAATGTAAGACTTGTAAATCCTCATTTAACACTCTGGAGTTCGCTATACAACGCCAGAAAGCCACACAAGAAACGAACAAGTCCAAAATGGTTCTCAGTGAACTATGTACTACGCAAATGAGCGATGATGAGGAGGCTTCGTGTTCAGGCTTTGGATCCCTGCACGAGTACATGGAACCAGAAAGCACCACGGGTGACATGAAAATTGAAACTCTGGATCTAGATGATGATATCATGGATATTAAGACAGAACCAATGTACCCATAA
- Protein Sequence
- MALMYQNNLDYYCDYCNRSFTRKYNLQTHIENCHINTSCFCDICDYKFGSPAGLQLHLSRGHNRFGQPSPECDICGRIFTRKQNITSHMITVHLQGVGPEIRCKVCHKIFTTERNLKRHMNLLHNPDVAYPTCDACKKVFKSKHSLLAHLHTVHNGSNKLIRCNLCQKVYTNNRNLKRHTEMFHGEKAEYRCEICPKIYTSNQSLRRHVKTRHDTDIDDLKTDCKVIMDNVESDDDDCDDLNNEINGFLCETCNKLFSDEQLLRRHIKLGHSFETFYKYCKSYLQRQTNAEPVVLQLVFKCEFCFSAFLSVYELKDHMKVHHDIEYCLSTCNVCFNKFYSKETLVEHKKICLPPPNVNSCNYCDKLFTDISSLEFHTRIFHPQSQIADSFISSTKDDTKDVCSYKCRHCDRMYYSERSLKHHIKLKHTAVEAVECEYCGKLCNNKYYLASHIKIVHNNDTWSKCDYCEKRFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTCFPQCHICQKRFESAKSCKIHLKLIHSFNMNTYPCDLCSVSFSSKEALKIHLETKHLAEDEIYKCEDCNMVFKGPQKFEDHNEVCQVNFVTNPNQKSLPRCIICMKDFSTRKTLKRHIKKFHTDFEVEELANYASWKRTFTVDCEDCIKGFTNDFNINTYNRVKQSRDSKVFKCKTCKSSFNTLEFAIQRQKATQETNKSKMVLSELCTTQMSDDEEASCSGFGSLHEYMEPESTTGDMKIETLDLDDDIMDIKTEPMYP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856883;
- 90% Identity
- -
- 80% Identity
- -