Obrm012104.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- -
- Assembly
- GCA_001266575.1
- Location
- JTDY01005036.1:19526-21874[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.4e-07 5.3e-05 23.4 4.5 1 23 11 34 11 34 0.95 2 20 0.00048 0.03 14.7 0.3 2 23 40 62 39 62 0.94 3 20 4.7e-06 0.0003 21.0 0.3 2 23 71 93 71 93 0.97 4 20 8.9e-05 0.0057 17.0 2.2 3 23 103 124 101 124 0.91 5 20 0.0015 0.094 13.1 1.5 2 23 132 154 132 154 0.91 6 20 1.1e-05 0.00072 19.8 1.7 2 23 162 184 161 184 0.95 7 20 1.2e-06 7.8e-05 22.8 0.9 1 23 190 213 190 213 0.98 8 20 0.00023 0.015 15.7 0.5 3 23 248 269 247 269 0.96 9 20 0.094 6 7.5 2.3 1 23 296 318 296 319 0.96 10 20 0.063 4 8.0 0.5 2 21 327 346 326 347 0.94 11 20 0.038 2.4 8.7 0.8 2 23 356 378 356 378 0.92 12 20 0.0014 0.088 13.2 6.8 1 23 401 424 401 424 0.97 13 20 7.7e-05 0.0049 17.2 1.0 2 23 431 453 430 453 0.96 14 20 4.1e-05 0.0026 18.0 2.4 2 23 460 482 459 482 0.94 15 20 0.0056 0.36 11.3 2.2 1 23 488 511 488 511 0.97 16 20 0.14 9.1 6.9 7.1 2 23 519 541 519 541 0.95 17 20 0.00074 0.047 14.1 0.1 1 23 548 571 548 571 0.96 18 20 0.0058 0.37 11.3 0.3 1 19 578 596 578 598 0.95 19 20 0.013 0.83 10.2 2.7 3 23 616 637 615 637 0.91 20 20 1.7 1.1e+02 3.5 2.2 1 12 687 698 687 701 0.91
Sequence Information
- Coding Sequence
- ATGGCATTAACGTATCAAAATAACTTTGAATACTATTGTGACTACTGCGACCGCTCATTCACTAGAAAGTACAATCTTCAAACCCACATTGAAAACTGTCATATCAACACATCTTGCTCCTGTGAGATATGTGACTATAAGTTCGGGAGCCCTGCTGGCTTACAATTGCACCTGTCTCGAGGACACAACAGATTTAGTCAACCATCACCAGAATGCGATATATGCGGCAGAATTttcacaagaaaacaaaacattacgtCTCACATGATCACAGTCCATCTACAAGGCGTTGGACCTGAAATAAGATGCATAGTCTGCCATAAAATATTTACGACAGAAAGGAATCTCAAGAGGCATATGAAGCTACTGCACAACCCTGGTGTAGCGTATCCTACTTGCGATGCGTGTAAGAAAGTTTTCAAGAGCAAACACTCCTTGCTAGCTCACTTCCAAGCGGTTCATAATGGAAGCAACAAACTTATAAGATGCAATCTGTGCCAAAAGGTATACACAAATAACAGAAATTTGAAGAGGCATACAGAGATGTTCCATGGTGAAAAGGCGGAATACAGATGTGGAGTCTGTCCTAAAATCTACACTTCTAATCAGAGTTTAAGGCGTCACATCAAAACTACACACGATACTGATGATATAAAAACTGAAAGTAAATCTTTTATAGACAATATTGAAAGTGATTatgatgattttgatgattttaaCAATGAAATGAACGCTGTCTTATGCGAGACTTGCAACAAGCCGTTTAGCGAAGAGCAACTGCTTAGACGGCATATAAAACAGGACCATTCGTTTGAAACATTCTATCAGTACTGCAAGAGTTACTTGCAAAGAGAGAATGCCCAACAGGATGATTTGCAGCTGGTTTTCAAATGCGAGTTTTGTTTTTCGGCTTTTCTGAGCGTCTACGAGCTCAAAGATCACATGAAAGTACACCATGATATCGAGTACTGTCTGTCAACTTGTAACGTGTGCTTCAACAAGTTTTACAGTAAGGAAACCTTAGTAGAGCATAGAAAGATATGCCTGCCACCGCCGAACGTAAACTCTTGCAACAACTGCGACAAACTGTTCACAGATATCTCTAGTCTGGAGttccactcgagaatctttcaTCCGCAATCGCAAATTGCCGATTCTTACATATCTTCGACTAAAGACGACCCAAAAGATGTGTGTTCGTACAAATGTCGTCACTGCGATCGGATGTATTACAGCGAGCGCTCTCTGAAACATCATATCAAACTGAAACACACGACTGTCGAGACGGTAGAGTGCAAATATTGTGGGAAGCTCTGCAACAACAAGTACTACCTCGCTTCGCATATCAAGATCGTCCACAATAATGACACTTGGTCTAAATGCGACTATTGCGAGAAGAGATTCAAATCGAAGAGAAATATTCGAAGACACATCGAATATACGCACATGGGAATGCAGAGATACAAGTGTATCGAATGCGAGACTCTCTTCAAAGAGAAACGCAGCTTACGGAAACATGTCCGAACTAAGCACCCCAATTCCACCTGTTTTCCCCAATGCCACATTTGCCATAAACGATTCGAGTCTGCAAAGTCTTGTAAGATACATCTAAAGCTACTTCACTCTTTCAACATGAACACATACCCTTGCGATCTGTGTTCCGTATCGTTCGGTTCCAAAGAAGCTTTAAAGATCCACCTGGGGACCAAACACTTAGCAGAGGATGAGATATACAAATGTGAAGACTGTAACATGGTGTTCAAGGGATCGCAAAAGTTCGAGGAGCACAGCGGAGTGTGCCAAGTAAATTTCACCTCTAATCCCAATCAGAAATTGATGCCGCGATGCATTATTTGCATGAAAGACTTCAGCACGCGGAAGACGTTGAAGCGTCACATCAAGAAGTTCCACGCAGATTTCGAAGTGGAAGAACTCGCGGACTACGGATCATGGAAAAGGGCTTTCGCCGTTGACTGCGAGGATTGCATCAAGGGTTTCACCAACGATTTCAACGTAAACACCTACAATAGGGTTAAACACTCCCGCGATTCAAAAGTATTCAAATGTAAGACTTGTAAATCCTCATTCACCACTTTGGAGTTCGCTATACAACGCCAGAAAGCAATACAAGAAACGAAAAAGCCCAAAATGGCTCTCAGTGAACTATGTACTACGCAAATGAGCGATGACGAAGAGGCTTCGTGTTCAGGGCTTGGATCCTTGCACGAGTACATGGAACCAGAAAGTACAACGGGGGACATAAAACTTGAAGTTCTGGATCTAGATGAGGATATCATGGATATTAAGTCAGAACCAAGGTCCCCATATGATCTCCAAGATCTAATTTGA
- Protein Sequence
- MALTYQNNFEYYCDYCDRSFTRKYNLQTHIENCHINTSCSCEICDYKFGSPAGLQLHLSRGHNRFSQPSPECDICGRIFTRKQNITSHMITVHLQGVGPEIRCIVCHKIFTTERNLKRHMKLLHNPGVAYPTCDACKKVFKSKHSLLAHFQAVHNGSNKLIRCNLCQKVYTNNRNLKRHTEMFHGEKAEYRCGVCPKIYTSNQSLRRHIKTTHDTDDIKTESKSFIDNIESDYDDFDDFNNEMNAVLCETCNKPFSEEQLLRRHIKQDHSFETFYQYCKSYLQRENAQQDDLQLVFKCEFCFSAFLSVYELKDHMKVHHDIEYCLSTCNVCFNKFYSKETLVEHRKICLPPPNVNSCNNCDKLFTDISSLEFHSRIFHPQSQIADSYISSTKDDPKDVCSYKCRHCDRMYYSERSLKHHIKLKHTTVETVECKYCGKLCNNKYYLASHIKIVHNNDTWSKCDYCEKRFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTCFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSKEALKIHLGTKHLAEDEIYKCEDCNMVFKGSQKFEEHSGVCQVNFTSNPNQKLMPRCIICMKDFSTRKTLKRHIKKFHADFEVEELADYGSWKRAFAVDCEDCIKGFTNDFNVNTYNRVKHSRDSKVFKCKTCKSSFTTLEFAIQRQKAIQETKKPKMALSELCTTQMSDDEEASCSGLGSLHEYMEPESTTGDIKLEVLDLDEDIMDIKSEPRSPYDLQDLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856883;
- 90% Identity
- -
- 80% Identity
- -