Hnat017637.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliconius nattereri
Gene Symbol
-
Assembly
GCA_013403645.1
Location
JAAIXI010000236.1:11719435-11725379[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 4.1 2.8e+02 2.4 0.0 2 17 73 88 73 89 0.86
2 29 0.00013 0.0088 16.5 0.2 1 21 162 182 162 183 0.95
3 29 4.6 3.1e+02 2.2 0.2 3 19 191 206 190 211 0.72
4 29 0.038 2.6 8.8 1.3 2 23 217 239 216 239 0.90
5 29 0.0079 0.54 10.9 0.5 3 23 246 266 245 266 0.96
6 29 0.62 42 5.0 5.6 3 21 271 289 270 290 0.94
7 29 0.0003 0.021 15.4 2.8 2 23 333 355 332 355 0.95
8 29 0.0033 0.22 12.1 0.3 1 23 388 410 388 410 0.98
9 29 0.00093 0.063 13.9 0.6 1 23 416 439 416 439 0.97
10 29 0.00079 0.054 14.1 1.8 2 23 449 471 448 471 0.97
11 29 2.4e-05 0.0017 18.8 2.5 1 23 481 503 481 503 0.98
12 29 8e-05 0.0054 17.2 0.6 1 21 616 636 616 637 0.95
13 29 0.2 13 6.5 0.4 3 23 670 691 669 691 0.96
14 29 0.0027 0.18 12.4 1.3 2 23 697 718 696 718 0.97
15 29 2.8 1.9e+02 2.9 5.2 1 21 721 741 721 742 0.94
16 29 0.00059 0.041 14.5 0.5 1 23 754 777 754 777 0.93
17 29 0.096 6.6 7.5 3.8 1 23 783 805 783 805 0.95
18 29 2.7 1.9e+02 2.9 0.5 1 23 839 862 839 862 0.87
19 29 1e-05 0.00068 20.0 0.7 3 23 869 890 869 891 0.98
20 29 0.0009 0.061 13.9 1.2 2 21 1000 1019 999 1020 0.94
21 29 0.39 27 5.6 0.1 3 23 1027 1048 1026 1048 0.96
22 29 0.13 9 7.1 0.6 1 23 1053 1076 1053 1076 0.96
23 29 0.00051 0.035 14.7 0.4 2 23 1082 1103 1081 1103 0.97
24 29 0.36 25 5.7 1.9 2 21 1107 1126 1107 1127 0.92
25 29 2e-05 0.0014 19.1 1.4 1 23 1153 1176 1153 1176 0.95
26 29 0.0013 0.086 13.4 0.4 1 23 1182 1204 1182 1204 0.92
27 29 0.095 6.5 7.5 0.1 1 23 1210 1232 1210 1232 0.97
28 29 0.00051 0.035 14.7 0.5 1 23 1238 1261 1238 1261 0.96
29 29 0.001 0.069 13.7 2.5 2 23 1268 1290 1267 1290 0.95

Sequence Information

Coding Sequence
atgaCCCGACAAGTTGATGTAAAAGCTTTAGTTTCGCACATAGTGCGCGGAGACGGTGCAAATAAATGTCGAATATGTTTAGGTGATACAACGGAGGGACAAGTCTACTTAAGCGATACAGTGATGATGGATGGTGATAAGGCGGTTACTTTATCGGAAATATTGGAAACAATAACTGGAATAAagGTGGTGATGGAAGGGGACTTACCCGAGGGAGTCTGTCCTGAGTGCTCCAGATCAGCTACAAATGCTGCTGAGTTCAAATTATTATGTCAAGCAGCAGCTCAGCAATGGGATACCACTATAGCTCTTCTCCATGACCTGCCTTCCCAATGCACAGACAATAAAACCGTTTTTGCTAtaattgacaaaaataaaatgattgccATTAATGATATGAAAAAATCGTACAACCATACCACTGCAGCTCTTCGATTAACTAAATACTTATCCAAGTGTCCAGAACCTAAAAAGGACAGTATATATGAATGTCCAAATTGTGATAAAAGCTTCTCGAGTccaattaaatttagtttacatTTGAAAGAATCTCCAGATTTGCAACGAGCATGTTACGTATGCGGCGCTATCGTATCTCATAATAGTTTGCTAAAccatttaattaagaaacataAGGAAAAACCAATTAGTTGTAAGAAATGTACAGCAGTATTCCGTTCTTATAATCAATATATGCATCATGTGGAGGCAACTCATAAGTATGGTCGGGCCTTCTGTGGTGATTGCGGACGTAGTTTTCAGTCGCTTAATGCTTATCATGCTCATGTTTCAATACATGTATCTAAAAACTGTCCAAGCTGTGATAAACTATTCCGTAACCattcctgctatatgcatcATACAAAGAACTGTTGTGAATTATAcattaagaaaaaagtaatgaaaaaaaaaaagaatgttactatagaaattaataatgccAAAAACAATCGTAAAATCAATGTAGGGCTTCGAGGAGCTACATGCAAAGAGTGTATATGTGATTATTGTGGCAAAACATTTGCCAGAAAGAAATTCATTTGTGCACATATACAAATAGTCCACATGAGGAATACCCACCGTCCCTGCATTTACTGTGGAAAGCTGTTAGCATCAGCTCATATGTCAGAACATATGAAACAGCATAAGCCTGATTGTACCTTCACTTGTGAACAATGtggcataatattaaaaactaagttGGGATACAATCAACATATACGTTTACATACTGGAGAGAGACCCTACGAATGTAAGCAATGTGGGGAAACATTCTCAGCATCTTCAAGACGGTCAGAACATATACGGAAAGTTCACAAAACAAAAGATATCATTCTAAAGCAGCAGTGTCACCTCTGTCCAGCCAAATTCAGGTTGCCATATCGACTGAAAAGACACCTGAGGTCAGTCCACAATGATGACCAGGATCAAACTTCTCAGTTTGAATGTACTGTATGCGGGGAGAAGTTCAGTTCATCCCGTGGACTGAATCATCATAGTCGGAAACATCAAAATGTGAAATCGGTGGTGGACGAAACCGACTTTCCCGCGGCGTTGTGCTGCGCGTGCGCTAATAACGCCATATCGGCGTGGCAGTTCAGACACCTATGCCATGAGTCGCACAACCATTGGACTAAAATTACCGAGGACCTGATGATAGCAGAGAATCCAACTAAACAAGATAAGACCTTTTATATAACGTGTAATGGAACTGTCTTTAATGATTATGTGGCTGTTAGTCAGTCTCGAGAAGATGCTATCAAAAGACTGAATTTTTTGTCTGGTGCTAAACATAAAATTCGTgcgaaatataaaaagaaatgttccAAAAAGAGTGAAAAGAAGTACAAGTGCAAGGATTGCGGTAAACAATTTGAATTACCCTATTTCTTGAATCGACATTTGCTAAATTCGTCGGTACGCGCTTGCACACTGTGCGGGAAGGTTGTgttgaaagaaaaattacCAGTACATTTGGAGAGGTCTCACCAGCTAATGGTCgaattttgtgatatttgcTATAAGTTATTTGATGATAGACTTCTTTTGGATCGCCATAAACAGATATTGCATGCAGATAGCAGCTTACAGTGCAATACCTGTAGGAACGGCTTCAAAAATGATCGATCCCTTAGAGCTCATATGTACACACACACCCTTTTTAACTGTTCATTGTGCAACAGCAGTTTTGAAAACAGAAAATGTTACTTACACCATAGGAACAATTGTCAAGGATCCAAATGTAtgaatcaatatatttacgaatgTAACGACTGCGGGAgcaaatatactaaaaaaccGTCTTTAAGAGTACACATAGTCCagaaacatttaaatgttCTACCATATATTTGCCAAATTTGTGGGAAACGAAGTTCTTCGAAGACCCACCACAAATCTCACGAATTAGTTCACAAgactgaaagaaaaatatatcagtGCTTCTGCGGTGCCAAGATGAGAACAGTCCACGGCTTTCAAATGCATCAGAGGATCCATTCTGGGGAGAAACCATATGAATGTCAGGAATGTGGGGACAGGTTTCTATCGGCTTCCAGAAGGTTGGATCATATAAAGAGGAAGCATAGACTGAAAAATCTTGGCTGTGATGAGTGTGACGCAAGATTTGTTAGACCCTCGGAGTTGAAGAAGCACTGGAGGACTGCCCATCATGTGCAAGAGGATCAATTGTTTCCACGAGGCCTGTGCGTGTCCTGCACTAGGGTAGCCGTGTCTGCTTCGGAATTCCGAATTTTTGTAACGAAATCACAGCGATTGTGGTCCAATTGTATAGACTCCCTTCACACTCTTCCAACTCTGAATACTTCCCAAAAATCCCTATATGCAATCGTTAGAGAAAACCTGTTGCTACAAACTGTCAATCATTTTGAAGGGAATGCAAAAGATTTGTTAGAACATTTAACTAATAGAATTGTGAAACGAAAGAATTTATTAGTGGAACGGAAGCCTAGGCATCCTAGGACAGGACCAGCGTGCAGCTGCACAGATTGTGGCAAGAGCTTCCTTAGTCCATATTACCTAAATATGCATTTACGGAACAGTGGACAGAAGGAAGCTTGTTGGCTCTGTGGCGCCATGTTAACACGAGGGCAAGAAATGAAAGAGCATCTAcggaaaatacataaaaccgAAATGTTTATTTGCTCAGAATGTCCATTGCTTTTTAAAACAGACGTGGACAGAAAGCGTCATGCCAAAAAAAATCACGGGCCCGGTGTCATGACGTGCGCGGATTGTGGGAGAACATTCCAGAGGAGTGCGTCTTTCGATGTGCACACACAAATGCACACAGTGCGTACATGTAGATCCTGTGGAGCACAGTTTACAAATCGTGGCTGTTACAGAGCGCACAGGTCCAAGTGTGAACCTGACGCTAAACCAGATTTGAAGACGATACCAAGAAACAGACGTTCTAATATCCGTGACCCGGCAACTTTCACTTGTGACTATTGTGGCAAGACCTACCATTCGCGTccgcaattaaaaaatcatatactaTGGATTCACATGGATATACGACCCCATCAGTGTCAGTGGTGtggaaaaagattttatacgCCAGCCCGTTTGGCCGAACACTCAGTAGTTCATACGAGAGTGAGGAATTTTGAATGTGATATCTGTGGTGCCAAGTTAGTGTCCAAAATGGCGGCTGTGTACCACAGGAGACGGCACACAGGTGAAAGACCATACGAATGCCCAGATTGTGGAGAAAAGTTTATATCTTCATCTCGTAGAACAGAGCATGCCAAGCGAAGACATAATAAAGGTTCCCGTATCCATTGCTCGGAATGTCTGGCGAGTTTTGTGAGGAATCATGAATTAAAGAAACATATGGACAAAGttcataataatgaaaatcatgttgttgtcaaaataaaaaaggagaaCAAAGAGTATCATATGAAGGCTGTATGA
Protein Sequence
MTRQVDVKALVSHIVRGDGANKCRICLGDTTEGQVYLSDTVMMDGDKAVTLSEILETITGIKVVMEGDLPEGVCPECSRSATNAAEFKLLCQAAAQQWDTTIALLHDLPSQCTDNKTVFAIIDKNKMIAINDMKKSYNHTTAALRLTKYLSKCPEPKKDSIYECPNCDKSFSSPIKFSLHLKESPDLQRACYVCGAIVSHNSLLNHLIKKHKEKPISCKKCTAVFRSYNQYMHHVEATHKYGRAFCGDCGRSFQSLNAYHAHVSIHVSKNCPSCDKLFRNHSCYMHHTKNCCELYIKKKVMKKKKNVTIEINNAKNNRKINVGLRGATCKECICDYCGKTFARKKFICAHIQIVHMRNTHRPCIYCGKLLASAHMSEHMKQHKPDCTFTCEQCGIILKTKLGYNQHIRLHTGERPYECKQCGETFSASSRRSEHIRKVHKTKDIILKQQCHLCPAKFRLPYRLKRHLRSVHNDDQDQTSQFECTVCGEKFSSSRGLNHHSRKHQNVKSVVDETDFPAALCCACANNAISAWQFRHLCHESHNHWTKITEDLMIAENPTKQDKTFYITCNGTVFNDYVAVSQSREDAIKRLNFLSGAKHKIRAKYKKKCSKKSEKKYKCKDCGKQFELPYFLNRHLLNSSVRACTLCGKVVLKEKLPVHLERSHQLMVEFCDICYKLFDDRLLLDRHKQILHADSSLQCNTCRNGFKNDRSLRAHMYTHTLFNCSLCNSSFENRKCYLHHRNNCQGSKCMNQYIYECNDCGSKYTKKPSLRVHIVQKHLNVLPYICQICGKRSSSKTHHKSHELVHKTERKIYQCFCGAKMRTVHGFQMHQRIHSGEKPYECQECGDRFLSASRRLDHIKRKHRLKNLGCDECDARFVRPSELKKHWRTAHHVQEDQLFPRGLCVSCTRVAVSASEFRIFVTKSQRLWSNCIDSLHTLPTLNTSQKSLYAIVRENLLLQTVNHFEGNAKDLLEHLTNRIVKRKNLLVERKPRHPRTGPACSCTDCGKSFLSPYYLNMHLRNSGQKEACWLCGAMLTRGQEMKEHLRKIHKTEMFICSECPLLFKTDVDRKRHAKKNHGPGVMTCADCGRTFQRSASFDVHTQMHTVRTCRSCGAQFTNRGCYRAHRSKCEPDAKPDLKTIPRNRRSNIRDPATFTCDYCGKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECPDCGEKFISSSRRTEHAKRRHNKGSRIHCSECLASFVRNHELKKHMDKVHNNENHVVVKIKKENKEYHMKAV