Haoe011369.2
Basic Information
- Insect
- Heliconius aoede
- Gene Symbol
- -
- Assembly
- GCA_037355905.1
- Location
- JBAIZZ010000304.1:382329-388107[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00012 0.0071 16.9 0.4 1 21 162 182 162 183 0.95 2 23 0.45 27 5.6 0.1 3 23 191 211 190 211 0.94 3 23 0.013 0.78 10.5 0.4 1 23 239 261 239 261 0.98 4 23 0.00094 0.056 14.1 0.6 1 23 267 290 267 290 0.97 5 23 0.00094 0.057 14.1 1.4 2 23 300 322 299 322 0.96 6 23 0.0008 0.048 14.3 1.4 2 20 444 462 443 464 0.93 7 23 0.51 31 5.5 2.1 3 23 497 518 496 518 0.95 8 23 0.0019 0.11 13.1 0.4 2 23 524 545 523 545 0.97 9 23 9.9 5.9e+02 1.4 5.6 1 21 548 568 548 569 0.94 10 23 0.0006 0.036 14.7 0.5 1 23 581 604 581 604 0.93 11 23 0.079 4.7 8.0 3.4 1 23 610 632 610 632 0.95 12 23 1.1 63 4.5 0.4 5 23 642 660 640 660 0.95 13 23 2.7 1.6e+02 3.2 0.5 1 23 666 689 666 689 0.87 14 23 4.7e-06 0.00028 21.3 0.6 3 23 696 717 696 718 0.98 15 23 0.00091 0.054 14.1 1.2 2 21 827 846 826 847 0.94 16 23 0.39 23 5.8 2.1 1 23 880 903 880 903 0.96 17 23 0.00052 0.031 14.9 0.4 2 23 909 930 908 930 0.97 18 23 0.24 14 6.5 1.8 2 21 934 953 934 954 0.91 19 23 2e-05 0.0012 19.3 1.4 1 23 980 1003 980 1003 0.95 20 23 0.0013 0.076 13.7 0.4 1 23 1009 1031 1009 1031 0.92 21 23 0.096 5.8 7.7 0.1 1 23 1037 1059 1037 1059 0.97 22 23 0.002 0.12 13.0 0.8 1 23 1065 1088 1065 1088 0.96 23 23 0.00025 0.015 15.9 1.6 3 23 1096 1117 1094 1117 0.95
Sequence Information
- Coding Sequence
- atgacccGACAAGTCGATATTAAAGCTCTAGTTTCGCACATAGTGCGCGGGGACGGCGCAAATAAGTGCCGAATATGCTTAGGAGATACAACGGAAGGACAAGTCTACTTAAGCGATACAGTGATGATGGATGGTGATAAAGCGGTTACTTTATCGGAAATATTGGAAACAATAACAGGAATAAAGGTGCTGATGGAAAGGGATTTACCCGAGGGAGTGTGTCCTGAGTGCTCCAGATCAGCTATAAGTGCTGCCGagttcaaattattatgtcAAGCAGCAGCTCAGCAATGGGATACCACTATAGCTCTTCTCCACGACCTGCCTACCGAATGTGcagataataaaacagtttttgcTATAATTGACAAAACTAAAATGATTACCATTaatgatatgaaaaaatcatacaacCATATCACTGCAGCTCATCGGTTAACTAAATACTTATCCAAGTGCCCAGAACCTAAGAAGgacagtatatataaatgtccAAATTGTGATAAAAGTTTCTCAAGTGCAATTAAATTTAGTCTACACTTGAAAGAATCTCCAGATTTGCAACGAGCATGTTATGTATGCGGCACTATCGTATTTCAAAATAGTTTGATAGTCCACATGAGAAATACCCACCATCCCTGCATTTACTGCGGAAAGCTATTAGCATCAGCTCATATGTCGGAACATATGAAACAGCATAAGCCTGATCGTACCTTCACTTGTGATCAATGtggcttaatattaaaaactaagttGGGATACAATCAACATGTACGTCTACATACTGGAGAAAGACCTTACGAATGTAAGCAATGTGGGGAAACATTCTCAGCATCATCAAGACGGTCAGAACATATACGGAAAgttcacaaaataaaagatataatctTGAAGCAGGAGTGTCACCTTTGTCCAGCCAAGTTCAGGTTGCCATATCGACTGAAAAGACATCTGAGGTCAGTCCACAATGATGAACAGGAGCATACTTCTCAGTTTGAATGTACTATGGTGGACGAAACCGACTTCCCCGCGGCGTTGTGCTGCGCGTGCGCATATAACGCCATATCGGCGTGGCAGTTCAGACACCTATGCCATGAGTCGCACAACCATTGGACTAAAATTACCGAGGCCCTGATGATACCAGAAAATCCAACTAAACAAGATAAGGCcttttatataacatgtaatGGAAATATCTTCAATGATAATGTGACTGTTAGTGATTCTCGAGAAGATGCTATCAAAAGATTGAATTTTTTGTCTGGTGCGAAACATAAAGTTCGTgccaaatacaaaaaaaaatcttccaaAATGAGTGAAAACAAATGCAAGTGCAAGGATTGCGGTAAACAATTTGATTTACCCTATTTCTTGAACCGGCATTTGATAAATTCTTCGGTACGCGCTTGCACATTGTGCGGGAAGGTtgttttgaaagaaaaattgcCAGCACATTTGGAAAGGTGTCACCAGCATTCGGTCGAATTTTGTGATATTTgctataagttatttaacgaTAGACTTCTTTTGGATCGGCACAAACACATGTTGCACGCAGATAGCAGCTTGCAGTGCAACATATGTAGAAACGGCTTCATAAATGATCGATCCCTAAGAGCTCATATGTACACACATTCCCTTTTTAACTGTTCATCATGCAACAGCAGTTTTGAAAACAGAAAATGTTACTTACACCACAGAAACAATTGTCAAGGACCCAAATGTACAAGTCAAGATATTTACGAATGTAACGACTGCGGGAgcaaatatactaaaaaaccATCTTTAAGAGTACATATAGtccaaaaacatttaaatgttcTACCATACATTTGCCAAATTTGTGGGAAACGAAGTTCTTCGAAGACCCACCACCAATCTCACGAATTGGTTCACAAgactgaaagaaaaatatatcaatgctACTGTGGCGCCAAGATGAGAACAGCCTACGGCTTTCAAATGCATCAGAGGATCCATTCTGGGGAGAAACCATACGAATGTCAGGAATGTGGAGACAGGTTTCTATCGGCTTCCAGAAGGTTGGATCATATAAAGAGGAAGCATAGACGGAAGGATCTTGGCTGTGATGAGTGTGGCGCAAGGTTTGTTAGACCTTCGGAGTTGAAGAAGCACTGGAGGACTGCCCATCATGTGCAAGAGGATCAATTGTTTCCACGAGGCCTGTGCGTGTCCTGCACTAGGGTAGCCGTGTCTGCATTGGAATTCCGAATTTTTGTAACGAAATCACAGCGATTGTGGTCGAATTGTATAGATTCCCTTCACACTCTTCCAACTCTGACTACTTCTCAAAAATCCCTATATGCAATCGTTAGAGAAAACCTGTTGTTACAAACTGTCAATCATTTTGAAGGGAATGCGAAAGATTTATTGGAACATCTAACCAATAGAATTGTAAAACGAAAGGCTTTATTAGTGGAACGGAAGCCTAGGCATCCTAGGACAGGACCAGCGTGCAGCTGCACAGATTGTGGCAAGAGCTTCCTTAGTCCATATTACCTAAATATGCATTTACGGAACAGTGGACAAAAGGAAGCTTGTTGGCTCTGTGGCGCCATGTTAACACGAGGGCATGAAATGAAAGAGCATCTTTGGAAAATTCACAAAACcgaaatgtttatttgctcAGAATGTCCATTGCTGTTTAAAACAGACGTGGACAGAAAGCGGCATGCCAAAAAGTGTCATGGGCCCGGTGTCATGACGTGCGCAGATTGTGGCAGAACATTCCAGAGGAGTGCGTCTTTCGATGTGCACACACAAATGCACACAGTGCGTACTTGTAGAGCCTGTGGAGCACAGTTTACGAATCGTAGCTGTTACAGAGCGCACAGGTCCAAGTGTGAACCTGACGCTAAACCGGATATAAAGACAGTACCAAGAAGCAGACGATCTAATATCCGTGATCCGGCAACTTTCACTTGTGATTATTGTGGCAAGACCTACCATTCGCGTCcgcaattaaaaaatcatatactaTGGATACACATGGATATACGACCTCATCAGTGTCAGTGGTGTGGGAAAAGGTTTTATACGCCAGCCCGCTTGGCCGAACACTCAGTAGTTCATACGAGAGTGAGGAATTTTGAATGTGATATCTGTGGTGCCAAGTTAGTGTCCAAAATGGCGGCGGTGTACCACAGGAGACGGCACACAGGCGAAAGACCATACGAATGTCAGGATTGTGGAGAAAAGTTTATATCTTCATCTCGTAGAACGGAGCATGCCAAGCGAAGACATAATAAAGGCACCCGTGTCCATTGCCCGGAATGTCTGGCGAGTTTCGTGAGAAATCATGAACTTAAAAAACACATGGACAAAGctcataataatgaaaatcatgttgttgtgaaaataaagaagGAAAACAAAGAGTTTGAATGA
- Protein Sequence
- MTRQVDIKALVSHIVRGDGANKCRICLGDTTEGQVYLSDTVMMDGDKAVTLSEILETITGIKVLMERDLPEGVCPECSRSAISAAEFKLLCQAAAQQWDTTIALLHDLPTECADNKTVFAIIDKTKMITINDMKKSYNHITAAHRLTKYLSKCPEPKKDSIYKCPNCDKSFSSAIKFSLHLKESPDLQRACYVCGTIVFQNSLIVHMRNTHHPCIYCGKLLASAHMSEHMKQHKPDRTFTCDQCGLILKTKLGYNQHVRLHTGERPYECKQCGETFSASSRRSEHIRKVHKIKDIILKQECHLCPAKFRLPYRLKRHLRSVHNDEQEHTSQFECTMVDETDFPAALCCACAYNAISAWQFRHLCHESHNHWTKITEALMIPENPTKQDKAFYITCNGNIFNDNVTVSDSREDAIKRLNFLSGAKHKVRAKYKKKSSKMSENKCKCKDCGKQFDLPYFLNRHLINSSVRACTLCGKVVLKEKLPAHLERCHQHSVEFCDICYKLFNDRLLLDRHKHMLHADSSLQCNICRNGFINDRSLRAHMYTHSLFNCSSCNSSFENRKCYLHHRNNCQGPKCTSQDIYECNDCGSKYTKKPSLRVHIVQKHLNVLPYICQICGKRSSSKTHHQSHELVHKTERKIYQCYCGAKMRTAYGFQMHQRIHSGEKPYECQECGDRFLSASRRLDHIKRKHRRKDLGCDECGARFVRPSELKKHWRTAHHVQEDQLFPRGLCVSCTRVAVSALEFRIFVTKSQRLWSNCIDSLHTLPTLTTSQKSLYAIVRENLLLQTVNHFEGNAKDLLEHLTNRIVKRKALLVERKPRHPRTGPACSCTDCGKSFLSPYYLNMHLRNSGQKEACWLCGAMLTRGHEMKEHLWKIHKTEMFICSECPLLFKTDVDRKRHAKKCHGPGVMTCADCGRTFQRSASFDVHTQMHTVRTCRACGAQFTNRSCYRAHRSKCEPDAKPDIKTVPRSRRSNIRDPATFTCDYCGKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECQDCGEKFISSSRRTEHAKRRHNKGTRVHCPECLASFVRNHELKKHMDKAHNNENHVVVKIKKENKEFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00781193;
- 90% Identity
- -
- 80% Identity
- -