Basic Information

Gene Symbol
-
Assembly
GCA_032432895.1
Location
JAOYRS010000088.1:290857-297118[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.00036 0.028 15.4 0.7 1 21 162 182 162 183 0.95
2 29 2 1.5e+02 3.6 0.0 3 23 191 211 190 211 0.90
3 29 0.029 2.2 9.4 5.0 1 23 216 239 216 239 0.96
4 29 0.022 1.6 9.8 1.3 3 23 246 266 245 266 0.96
5 29 1 80 4.5 6.9 3 21 271 289 270 290 0.95
6 29 0.00092 0.07 14.1 2.7 2 23 332 354 331 354 0.95
7 29 0.32 25 6.1 1.0 3 23 362 381 361 381 0.90
8 29 0.0043 0.32 12.0 0.5 1 23 387 409 387 409 0.98
9 29 0.002 0.15 13.0 0.8 1 23 415 438 415 438 0.97
10 29 0.0054 0.41 11.7 1.3 2 23 448 470 447 470 0.95
11 29 0.018 1.4 10.0 7.3 1 23 479 501 479 501 0.98
12 29 0.00068 0.052 14.5 0.3 2 20 616 634 615 636 0.94
13 29 7.9 6e+02 1.7 0.0 3 12 642 651 641 662 0.81
14 29 0.59 45 5.2 0.3 3 23 669 690 668 690 0.90
15 29 0.00041 0.032 15.2 0.8 2 23 696 717 695 717 0.97
16 29 0.00046 0.035 15.0 0.3 1 23 753 776 753 776 0.95
17 29 0.091 7 7.8 3.4 1 23 782 804 782 804 0.95
18 29 3.2 2.4e+02 2.9 0.5 1 23 838 861 838 861 0.87
19 29 1.2e-05 0.0009 20.0 0.3 3 23 868 889 866 890 0.95
20 29 0.001 0.08 13.9 1.2 2 21 999 1018 998 1019 0.94
21 29 0.4 31 5.8 0.1 3 23 1026 1047 1025 1047 0.96
22 29 0.064 4.9 8.3 1.9 1 23 1052 1075 1052 1075 0.96
23 29 0.0006 0.046 14.7 0.4 2 23 1081 1102 1080 1102 0.97
24 29 0.7 53 5.0 1.3 2 21 1106 1125 1106 1126 0.91
25 29 2.3e-05 0.0018 19.1 1.4 1 23 1152 1175 1152 1175 0.95
26 29 0.0015 0.11 13.4 0.4 1 23 1181 1203 1181 1203 0.92
27 29 0.11 8.5 7.5 0.1 1 23 1209 1231 1209 1231 0.97
28 29 0.0016 0.12 13.3 0.4 1 23 1237 1260 1237 1260 0.94
29 29 7.1e-05 0.0054 17.6 0.7 2 23 1267 1289 1266 1289 0.95

Sequence Information

Coding Sequence
ATGACCCGGCAAGTAGATGTGAAGGCTCTAGTCTCTCACATAGTACGGGGAGACGGTGGAAATAAGTGCCGAATATGCTTAGGAGACACTAAGGAAGGACAAGTTTATTTAAGCGATACTGTGATGATGGACGGCGATAAGCCTGTAACCTTATCAGAAATACTGGAAACTATAACCGGAATCCAGGTGGAGATAGAAGGGGACTTACCCGAGGGACTGTGCCCGGAGTGCTTCCAATCTGCCTTTAACGCTGCAAAGTTCAGATCTCTATGTCATGAGGCACTGAGGCAATGGAACACCACAATTGCCTTACTCCACGACCTGCCTACCCAATGTActgataataaaacaatatttgcaaTTATCAATAAAACTCAAATGATCGCCATCAATGATATGAGACAGTCGTACAACCGCACAACCGCAGTGCAAAGACTAACAAAATACTTATCGAAACCCACAGATTCCAAACAGAACAATGCATTCAAATGTCCAAATTgtgataaaacatttataaatgcatttaaatttagtttacatttaaaagagtCATCAGATTCGCAACGAGCATGTTACATCTGTGGTATTATAATCCaacaatatgatttattaaaacatcTAATCGAGGAACATAAGGAAAAACCGTTCAGTTGTAAAAAATGCACAGCAATATTCTGCTCATATGACCAGTACACGCATCACATAGACAAGGCCCATAAGTTTGGCCGAGCTTTTTGCGGTGACTGTGGACGTAGCTTTCAATCTGTTCACGCCTATCATGCTCACGTCTCTGTACACACAACTAAAAACTGTCCGAGTTGCAACAAAATGTTCCACAACCACTCTTGTTATATACATCACACAAGAAATTGTACCGAATTAAACTCTAAGAAGAaaattcttaaaacaaaaaagaaagttactatagagataaaaaataaaagatataataataacaagaaacTGCCTCGTGGACCCGCTAACAAAGAGTGTATATGTGACTATTGCGGCAAACAGTTTGCCAGGAAGAAGTTTGTGTGCGCTCACATACAAATTGTGCATATGAAAAACACTCACAAACCCTGTATTTACTGCGGAAAGTTCTTTGCATCAGCCCACATGACGGAGCATATGAAACAGCATGAGTCAGCTCGGACGTTCACCTGTCAGCAATGTGGAAtagttttaaaaagtaaactgGGATATAACCAACATTTGCGTCTCCACACCGGAGAAAGGCCCTATGAGTGTAAATTTTGTGGGGAAACGTTTTCAGCATCTTCAAGACGTTCAGAGCATATTCGGAAAGTACACAAAAGTTCTGATATAGTACTAAAACAGCAGTGCCATCTCTGTCCGGCCAAATTCAGGCTGCCGTATCGGTTGAAGAAGCACCTGAAGGCAGTGCATAATGATGACCAAGACCAGATTCAGTTTGAGTGTACAGTGTGCCATGAAAAGTTCAGTTCCTGCCGAGGACTGGTACATCATAGTAGGAAACATCAGAAAGTTGCATTACCGGTGGTGGAAGAAACCGACCTCCCCGCTGGGTTGTGCTGCGCGTGCGCAGATAACGCCATATCGTCGTGGCAGTTCAGACACCTATGCCATGAGTCGCACACCCACTGGACTAAGATCACCACAACCCTGATGAAAACTGAAAACCCGACCACGAAAGATAAGACCTTTTATATCGCGACCTCTGGCACAGTTCTCAAAGACTACGCCACCAATATACACACTCGAGGAGATGCAATGCAAAGGTTAAACTTTTTGACGAGCGGCAAGCCCAAAACGCGTGCGaaatataagaagaaaatttCCCAAAGGGGTGAAAGTGATTCCAAGTGCAAGGATTGCGGCAAACAATTCGAGTTGCCTTATTTTTTGAATCGCCATTTGATAAATTCGTCAGTTCGCGCTTGTACTCTTTGCGGGAAGGTTGTGCCGCGGGAGAAGTTGCCAATACATTTAGAGAGGGCGCATCAACGCTTGGTCGAATTTTGTGATATTTGTTACAAGCTCTTTGATGATAAACTCCTTTTGGATCGACACAAGGGTATATTGCATGCCGACAGCAGCTTGCAATGTAACGTATGTAGGAACGGGTTCAAAAATGAGAGGTCTCTAAGAGCCCACATGTACACACATACGCTATTCAACTGTTTGTCATGCAATGGCAGCTTCGAGAATAGAAAATGTTATCTCTACCATAGGAACAACTGCAAAGGGTCCAAATTTTCAACTGAAGATATTTACGAATGTGACGACTGTGGCAGTAAATACACAAAGAAACCTTCTCTTAGAGTacatataattcaaaaacatctGAACGTTCTGCCATACATTTGTCAGATATGCGGGAAACGTAGCTCGTCCAAAACCCACCACCAATCCCATGAGCTGGTTCACAAGACTGAAAGGAAAATATATCAATGTTACTGTGGGGCTAAAATGAGGACGGTGCACGGTTTCCAGATGCATCAGAGGATACATTCGGGGGAGAAACCCTACGAGTGTCAGGAGTGTGGGGACAGGTTTCTGTCAGCATCTAGGAGATTGGATCACATTAAGAGGAAACACAGGCGGAAGGATCTTGCCTGTGATGAGTGTGACGCGAGGTTTGTTAGACCATCGGAACTGAGGAAGCATTGGAGGAGTGCTCATCATGTGCAGGAGGATCAACTGTTTCCTCGAGGTGTGTGCGTGTCTTGCACCAGTGTAGCGGTGTCTGCTTCGGAATTCCGAATATTTGTAGCGAAATCACAGCGATTGTGGGCCAATTGTGTAGATTCACTTCACACGCTCCCTAATCTGAACACCTCGCAGAAGTCCCTGTACGCGATCGTCAGAGACAACTTGTTGTTGCAGACCGTCAACCATTTTGAGGGGAACGCAAAAGATCTGATAGAACATCTCACTAATAGGATTGTGAAGAGGAAGACTTTATTAGTGGAAAGGAAGCCCAGACACCCCAGAACGGGGCCGGCGTGCAGCTGCACAGACTGTGGGAAGAGCTTCTTAAGTCCATATTACCTGAACATGCATTTGCGTAACAGTGGCCAAAAGGAAGCGTGTTGGCTCTGCGGCGCCATGTTGACGCGAGGGCAAGACATGAAGGAGCACCTGCGGAAAATTCACAAGACCGAAATGTTTATATGCTCGGAGTGCCCATTGTTGTTTAAAACAGAAGCGGATAGGAAGCGTCACGCCAAAAAGTGTCACGTCCCTGGTGTTATGACGTGCGCAGATTGCGGTAGGACTTTTCAAAGGAGTGCGTCGTTCGACGTGCACACGCAAATGCACACGGTGCGCACGTGTAGGGCGTGTGGAGCGCAGTTTACAAATCGGGGGTGTTACAGAGCGCACAGGTCCAAATGCGAACCAGACGCCAAGCCCGATTTGAAGACGATACCAAGAAATAGGCGATCAAACATACGTGACCCGGCAACATTTACTTGTGACTATTGTGGCAAGACGTATCATTCGCGTCcccaattaaaaaatcatatattatggATCCACATGGACATACGGCCTCACCAGTGCCAGTGGTGCGGCAAACGGTTCTACACGCCCGCCCGTTTGGCCGAACACTCTGTAGTCCATACACGGGTGAGAAACTTTGAGTGTGACATCTGTGGTGCCAAGCTCGTgtccaaaatggcggctgtgtaCCACAGACGGCGGCACACTGGTGAAAGACCGTACGAGTGTCCAGATTGTGGGGAGAAGTTCATTTCTTCATCGCGGAGATCGGAACACGCCAAGCGGCGACACAACAAGGGCACCCGTATCCGATGCCCGGAGTGTCTGGCGAGTTTTGTGAGGAAtcatgaattaaaaaaacatatggaCAAAGTGCACAACAATGAAAATCATGTTGTGGTCAAAATAAAGAAGGAGAACGAAGAGTTTGGCATTAAGGCTGTATGA
Protein Sequence
MTRQVDVKALVSHIVRGDGGNKCRICLGDTKEGQVYLSDTVMMDGDKPVTLSEILETITGIQVEIEGDLPEGLCPECFQSAFNAAKFRSLCHEALRQWNTTIALLHDLPTQCTDNKTIFAIINKTQMIAINDMRQSYNRTTAVQRLTKYLSKPTDSKQNNAFKCPNCDKTFINAFKFSLHLKESSDSQRACYICGIIIQQYDLLKHLIEEHKEKPFSCKKCTAIFCSYDQYTHHIDKAHKFGRAFCGDCGRSFQSVHAYHAHVSVHTTKNCPSCNKMFHNHSCYIHHTRNCTELNSKKKILKTKKKVTIEIKNKRYNNNKKLPRGPANKECICDYCGKQFARKKFVCAHIQIVHMKNTHKPCIYCGKFFASAHMTEHMKQHESARTFTCQQCGIVLKSKLGYNQHLRLHTGERPYECKFCGETFSASSRRSEHIRKVHKSSDIVLKQQCHLCPAKFRLPYRLKKHLKAVHNDDQDQIQFECTVCHEKFSSCRGLVHHSRKHQKVALPVVEETDLPAGLCCACADNAISSWQFRHLCHESHTHWTKITTTLMKTENPTTKDKTFYIATSGTVLKDYATNIHTRGDAMQRLNFLTSGKPKTRAKYKKKISQRGESDSKCKDCGKQFELPYFLNRHLINSSVRACTLCGKVVPREKLPIHLERAHQRLVEFCDICYKLFDDKLLLDRHKGILHADSSLQCNVCRNGFKNERSLRAHMYTHTLFNCLSCNGSFENRKCYLYHRNNCKGSKFSTEDIYECDDCGSKYTKKPSLRVHIIQKHLNVLPYICQICGKRSSSKTHHQSHELVHKTERKIYQCYCGAKMRTVHGFQMHQRIHSGEKPYECQECGDRFLSASRRLDHIKRKHRRKDLACDECDARFVRPSELRKHWRSAHHVQEDQLFPRGVCVSCTSVAVSASEFRIFVAKSQRLWANCVDSLHTLPNLNTSQKSLYAIVRDNLLLQTVNHFEGNAKDLIEHLTNRIVKRKTLLVERKPRHPRTGPACSCTDCGKSFLSPYYLNMHLRNSGQKEACWLCGAMLTRGQDMKEHLRKIHKTEMFICSECPLLFKTEADRKRHAKKCHVPGVMTCADCGRTFQRSASFDVHTQMHTVRTCRACGAQFTNRGCYRAHRSKCEPDAKPDLKTIPRNRRSNIRDPATFTCDYCGKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECPDCGEKFISSSRRSEHAKRRHNKGTRIRCPECLASFVRNHELKKHMDKVHNNENHVVVKIKKENEEFGIKAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00781193;
90% Identity
-
80% Identity
-