Hcha014217.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliconius charithonia
Gene Symbol
-
Assembly
GCA_030704555.1
Location
CM060824.1:3818467-3824284[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 7.4 5.7e+02 1.8 0.0 2 16 73 87 73 89 0.83
2 26 0.00019 0.015 16.3 1.7 1 21 162 182 162 183 0.95
3 26 0.019 1.4 10.0 3.3 1 23 216 239 216 239 0.96
4 26 0.0093 0.72 11.0 0.5 3 23 246 266 245 266 0.96
5 26 0.74 57 5.0 5.6 3 21 271 289 270 290 0.94
6 26 0.00055 0.042 14.8 2.1 2 23 333 355 332 355 0.95
7 26 0.0039 0.3 12.2 0.3 1 23 388 410 388 410 0.98
8 26 0.0011 0.085 13.9 0.6 1 23 416 439 416 439 0.97
9 26 0.0011 0.085 13.9 2.1 2 23 449 471 448 471 0.97
10 26 0.00092 0.071 14.1 1.4 2 20 591 609 590 611 0.93
11 26 0.23 18 6.6 0.4 3 23 644 665 643 665 0.96
12 26 0.00092 0.071 14.1 0.9 2 23 671 692 670 692 0.97
13 26 0.00071 0.054 14.5 0.5 1 23 728 751 728 751 0.93
14 26 0.11 8.8 7.5 3.8 1 23 757 779 757 779 0.95
15 26 3.2 2.5e+02 3.0 0.5 1 23 813 836 813 836 0.87
16 26 7e-06 0.00054 20.8 0.2 3 23 843 864 843 864 0.99
17 26 0.0011 0.082 13.9 1.2 2 21 974 993 973 994 0.94
18 26 0.46 36 5.6 0.1 3 23 1001 1022 1000 1022 0.96
19 26 0.26 20 6.4 1.9 1 23 1027 1050 1027 1050 0.96
20 26 0.00061 0.047 14.7 0.4 2 23 1056 1077 1055 1077 0.97
21 26 0.43 33 5.7 1.9 2 21 1081 1100 1081 1101 0.92
22 26 2.4e-05 0.0018 19.1 1.4 1 23 1127 1150 1127 1150 0.95
23 26 0.0015 0.12 13.5 0.4 1 23 1156 1178 1156 1178 0.92
24 26 0.11 8.7 7.6 0.1 1 23 1184 1206 1184 1206 0.97
25 26 0.00061 0.047 14.7 0.5 1 23 1212 1235 1212 1235 0.96
26 26 0.00029 0.022 15.7 1.7 2 23 1242 1264 1241 1264 0.95

Sequence Information

Coding Sequence
ATGACCCGACAAGTCGATGTAAAGGCTCTAGTTTCGCACATAGTGCGCGGAGACGGCGTAAATAAGTGCCGAATATGTTTAGGAGATACAACGGAAGGACAAGTCTACTTAAGCGATACAGTGATGATGGATGGTGATAAAGCGGTTACTTTATCAGAAATATTGGAAACAATAACTGGAATAAAGGTGGTGATAGAAGGGGACTTACCTGAGGGAGTGTGTCCTGAGTGCTCCAGATCAGCTAAAAATGCTGCCGAGTTCATATTATTATGTCAAGCAGCAGCTCAGCAATGGGATACCACTATAGCTCTTCTCCATGACCTGCCTTCCCAATGCACAGACAATAAAACAGTTTTTGCTataattgacaaaaataaaatgattgctATTAATGATATGAAAAAATCATACAACCATACCACTGCAGCTCATCGATTAACTAAATACTTATCCAAGTGCCCAGAGCCTAAAAAGGACAGTTTATATAAATGTCCAAATTGTGATAAATGTTTCTCAAGTCCAATAAAATTTAGTCTACATTTGAAAGAATCCCCAGATTTGCAACGAGCATGTTATGTATGCGGCATTATTTTATCTcaaaatattttgctaaatCATTTAATTAAGAAACATAAGGAAAAACCATTTAGTTGTAAGAAATGTACAGCAGTATTCCGTTCTTATAATCAATATATTCATCATGTAGAGAAAAGTCATAAGTTTGGTCGAGCATTCTGTGGCGATTGTGGACGAAGCTTTCAGTCACTTAATGCTTACCATGCTCATGTTTCAATACATGTATCTAAAAACTGTCCAAGCTGTGATAAACTATTCCGCAACCATTCCTGCTATATGCATCATACAAAGAACTGTTGTGAATTAGACAGTAAGAAAAAagttatgaagaaaaaaaagaaagtgattatagaaattaataatgcTAAAAACAATCGTAAAATCAATGTAGGGCTTCGAGGAGCTACGTACAAAGAGTGTGTATGTGATTATTGTGGCAAAATATTTGCCAGAAAGAAATTTATTTGTGCACATATACAGATAGTGCACATGAGGAATACCCACCGTCCCTGCATTTACTGTGGAAAGCTGTTAGCATCAGCACATATGTCGGAACATATCAAACAGCATAAGCCTGATCAGACCTTCACTTGTGAACAATGtggcataatattaaaaactaagttGGGATACAATCAACATATACGTCTTCATACTGGAGAAAGACCTTATGAATGTAAGCAATGTGGGGAAACATTCTCAGCATCATCTAGACGGTCAGAACATATACGGAAAGTTCACAAAACGAAAGATATAGTCCTAAAGCAGAAGTGTCATCTCTGTCCAGCCAAGTTTAGGTTGCCATATCGACTAAAAAGACATCTGAGATCAGTTCACAATGATGACCAAACTCCTCAGTTTGAATGTGCTGTGGTGGATGAAACCGACTTCCCCGCGGCGTTGTGCTGCGCGTGTGCTTATAACGCCATATCGGCGTGGCAGTTCAGACACCTATGCCATGAGTCGCACAATCATTGGACTAAAATTACCGAGGCCCTGATGATACCAGAAAATCCAACTAAACAAGATAAGGCCTTTTATATAACATGTAATGGAACTGTCTTCAATGATTATGTGGCTGTTAGTCATTCTCGAGAAGATGCTGTCAGAAGACTGAATTTTTTGTCTGGTGCTAAACATAAAGTTCGtgcgaaatataaaaaaaaatgttccaaaACGAATAAAAACGAGTGCAAATGCAAGGATTGCGGTAAACAGTTTGAATTACCCTATTTCTTGAATCGGCATTTGATAAATTCTTCGGTACGCGCTTGCACATTGTGCGGGAAGGTagtaatgaaagaaaaattgcCGATACATTTGGAGAGGTCTCACCAGCATTTGGTCGAATTTTGTGATATTTGCTATAAGTTATTTGACGATAGACTTCTTTTGGATCGGCATAAACAGATATTGCACGCAGATAGCAGCTTGCAGTGCAATATCTGCAGAAACGGCTTCAAAAATGATCGATCCCTAAGAGCTCATATGTACACACATACCCTATTTAACTGTTCTTCATGCAACTGTAGTTTTGAAAACAGAAAATGTTACTTACACCATAGGAACAACTGTAAAGGATCCAAATGTACAAGTCAAGATATTTACGAATGTAACGACTGTGGGAGCAAATACACTAAAAAACCGTCTTTAAGAGTACACATAGTCCAAAAACATTTAAACGTTCTACCATACATTTGCCAAATTTGTGGGAAACGAAGTTCTTCGAAGACCCACCACAAATCTCACGAATTGGTTCACAAAACTGAAAGAAAGATATATCAGTGCTACTGCGGCGCCAAAATGACAACAGTCCACGGCTTTCAAATGCATCAGAGGATCCATTCTGGGGAGAAACCATATGAATGTCAGGAATGTGGTGACAGGTTTCTATCGGCTTCAAGGAGGTTGGATCACATAAAGAGGAAGCATAGACGGAAGGATCTTGGTTGCGATGAGTGTGACGCAAGGTTTGTTAGACCTTCGGAGTTGAAGAGGCACTGGAGGACTGCCCATAATGTGCAAGAGGATCAATTGTTTCCACGAGGTCTGTGCGTGTCCTGCACCAGGGTAGCCGTGTCTGCTTCGGAATTCCGagtttttgtaacaaaatcaCAGCGATTGTGGTCCAATTGTATAGACTCCCTTCACACTCTTCCAACTCTGAATACTTCCCAAAAATCTCTATATGCAATCGTTAGAGAAAACCTGTTGTTACAAACTGTCAACCATTTTGAAGGGAATGCGAAAGATTTGTTAGAACACCTAACTAATAGAATTGTTAAACGAAAGTCTTTATTAGTGGAACGGAAGCCTAGGCATCCTAGGACAGGACCAGCGTGCAGCTGCACAGATTGTGGCAAGAGCTTCCTTAGTCCATATTACCTAAATATGCATTTACGGAACAGTGGACAGAAGGAAGCTTGTTGGCTCTGTGGCGCCATGTTAACACGAGGGCAAGAAATGAAAGAGCATCTACggaaaatacacaaaaccgAAATGTTTATTTGCTCAGAATGTCCATTGCTGTTCAAAACAGACGCGGACAGAAAGCGTCATGCTAAAAAGTGTCATGGGCCTGGTGTCATGACGTGCGCAGATTGTGGCAGAACATTCCAGAGGAGTGCATCTTTCGATGTGCATACACAAATGCACACAGTGCGTACATGTAGATCCTGTGGAGCACAATTTACGAATCGTGGCTGTTACAGAGCGCACAGATCCAAGTGTGAACCTGACGCTAAACCGGATTTAAAGACGATACCAAGAAACAGACGTTCAAATATCCGTGACCCAGCAACATTCACTTGTGATTATTGTGGCAAGACCTACCATTCGCGTCcgcaattaaaaaatcatatattatggATTCACATGGATATACGACCCCATCAGTGTCAGTGGTGTGGAAAAAGGTTTTATACGCCAGCCCGTTTAGCTGAACACTCAGTAGTTCATACGAGAGTGAGAAATTTTGAATGTGATATCTGTGGTGCCAAGTTAGTGTCCAAAATGGCGGCGGTGTACCACAGGAGGCGGCACACAGGTGAAAGACCATACGAATGCCCAGATTGTGGAGAAAAGTTTATATCTTCATCTCGTAGAACGGAGCATGCTAAGCGAAGACATAATAAAGGTTCCCGTATCCATTGCCCGGAATGTCTGGCGAGTTTTGTGAGAAAtcatgaattaaaaaaacatatggacAAAGTtcataataatgaaaatcatGTTGTTGTCAAAATAAAGAAGGAAAACAAAGAGTTTCATATGAAGGCTGTATGA
Protein Sequence
MTRQVDVKALVSHIVRGDGVNKCRICLGDTTEGQVYLSDTVMMDGDKAVTLSEILETITGIKVVIEGDLPEGVCPECSRSAKNAAEFILLCQAAAQQWDTTIALLHDLPSQCTDNKTVFAIIDKNKMIAINDMKKSYNHTTAAHRLTKYLSKCPEPKKDSLYKCPNCDKCFSSPIKFSLHLKESPDLQRACYVCGIILSQNILLNHLIKKHKEKPFSCKKCTAVFRSYNQYIHHVEKSHKFGRAFCGDCGRSFQSLNAYHAHVSIHVSKNCPSCDKLFRNHSCYMHHTKNCCELDSKKKVMKKKKKVIIEINNAKNNRKINVGLRGATYKECVCDYCGKIFARKKFICAHIQIVHMRNTHRPCIYCGKLLASAHMSEHIKQHKPDQTFTCEQCGIILKTKLGYNQHIRLHTGERPYECKQCGETFSASSRRSEHIRKVHKTKDIVLKQKCHLCPAKFRLPYRLKRHLRSVHNDDQTPQFECAVVDETDFPAALCCACAYNAISAWQFRHLCHESHNHWTKITEALMIPENPTKQDKAFYITCNGTVFNDYVAVSHSREDAVRRLNFLSGAKHKVRAKYKKKCSKTNKNECKCKDCGKQFELPYFLNRHLINSSVRACTLCGKVVMKEKLPIHLERSHQHLVEFCDICYKLFDDRLLLDRHKQILHADSSLQCNICRNGFKNDRSLRAHMYTHTLFNCSSCNCSFENRKCYLHHRNNCKGSKCTSQDIYECNDCGSKYTKKPSLRVHIVQKHLNVLPYICQICGKRSSSKTHHKSHELVHKTERKIYQCYCGAKMTTVHGFQMHQRIHSGEKPYECQECGDRFLSASRRLDHIKRKHRRKDLGCDECDARFVRPSELKRHWRTAHNVQEDQLFPRGLCVSCTRVAVSASEFRVFVTKSQRLWSNCIDSLHTLPTLNTSQKSLYAIVRENLLLQTVNHFEGNAKDLLEHLTNRIVKRKSLLVERKPRHPRTGPACSCTDCGKSFLSPYYLNMHLRNSGQKEACWLCGAMLTRGQEMKEHLRKIHKTEMFICSECPLLFKTDADRKRHAKKCHGPGVMTCADCGRTFQRSASFDVHTQMHTVRTCRSCGAQFTNRGCYRAHRSKCEPDAKPDLKTIPRNRRSNIRDPATFTCDYCGKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECPDCGEKFISSSRRTEHAKRRHNKGSRIHCPECLASFVRNHELKKHMDKVHNNENHVVVKIKKENKEFHMKAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00781193;
90% Identity
iTF_00781193;
80% Identity
-