Hcyd015806.1
Basic Information
- Insect
- Heliconius cydno
- Gene Symbol
- -
- Assembly
- GCA_036379175.1
- Location
- FAPN01029125.1:1-5813[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 3.9 5e+02 2.5 0.0 2 17 14 29 14 30 0.86 2 28 6.9e-05 0.0089 17.5 0.4 1 21 103 123 103 124 0.95 3 28 4.4 5.6e+02 2.3 0.2 3 19 132 147 131 152 0.72 4 28 0.0096 1.2 10.7 3.6 1 23 157 180 157 180 0.97 5 28 0.0071 0.91 11.1 0.5 3 23 187 207 186 207 0.96 6 28 0.6 77 5.1 5.6 3 21 212 230 211 231 0.94 7 28 0.00029 0.037 15.5 2.8 2 23 274 296 273 296 0.95 8 28 0.0031 0.4 12.2 0.3 1 23 329 351 329 351 0.98 9 28 0.00089 0.11 14.0 0.6 1 23 357 380 357 380 0.97 10 28 0.00076 0.097 14.2 1.8 2 23 390 412 389 412 0.97 11 28 3.6e-05 0.0046 18.4 0.5 1 21 533 553 533 554 0.95 12 28 0.19 24 6.6 0.4 3 23 587 608 586 608 0.96 13 28 0.0026 0.33 12.5 1.3 2 23 614 635 613 635 0.97 14 28 2.7 3.5e+02 3.0 5.2 1 21 638 658 638 659 0.94 15 28 0.00057 0.073 14.6 0.5 1 23 671 694 671 694 0.93 16 28 0.092 12 7.6 3.8 1 23 700 722 700 722 0.95 17 28 2.6 3.4e+02 3.1 0.5 1 23 756 779 756 779 0.87 18 28 9.6e-06 0.0012 20.2 0.7 3 23 786 807 786 808 0.98 19 28 0.00086 0.11 14.0 1.2 2 21 917 936 916 937 0.94 20 28 0.37 48 5.7 0.1 3 23 944 965 943 965 0.96 21 28 0.13 16 7.2 0.6 1 23 970 993 970 993 0.96 22 28 0.00049 0.063 14.8 0.4 2 23 999 1020 998 1020 0.97 23 28 0.35 45 5.8 1.9 2 21 1024 1043 1024 1044 0.92 24 28 1.9e-05 0.0025 19.2 1.4 1 23 1070 1093 1070 1093 0.95 25 28 0.0012 0.16 13.5 0.4 1 23 1099 1121 1099 1121 0.92 26 28 0.091 12 7.6 0.1 1 23 1127 1149 1127 1149 0.97 27 28 0.00049 0.063 14.8 0.5 1 23 1155 1178 1155 1178 0.96 28 28 0.00098 0.13 13.8 2.5 2 23 1185 1207 1184 1207 0.95
Sequence Information
- Coding Sequence
- ATGCAAATTGTGGTGATGGAAGGGGACTTACCCGAGGGAGTCTGTCCTGAGTGCTCCAGATCAGCTACAAATGCTGCTGAGTTCAAATTATTATGTCAAGCAGCAGCTCAGCAATGGGATACCACTATAGCTCTTCTCCATGACCTGCCTACCCAATGCACAGACAATAAAACCGTTTTTGCtatatttgacaaaaataaaatgattgccATTAATGATATGAAAAAATCATACAACCATACCACTGCAGCTCTTCGATTAACTAAATACTTATCCAAGTGTCCAGAACCTAAAAAGGacagtatatataaatgtccAAATTGTGATAAAAGTTTTTCGAGtccaattaaatttagtttacatTTGAAAGAATCTCCAGATTTGCAACGAGCATGTTACGTATGCGGCGCTATCGTATCTCATAATAGTTTGCTAAAccatttaattaagaaacatAAGGAAAAACCATTTAGTTGTAAGAAATGTACAGCAGTATTCCGTTCTTATAATCAATATATGCATCATGTGGAGACAACTCATAAGTATGGTCGGGCCTTCTGTGGTGATTGCGGACGTAGTTTTCAGTCGCTTAATGCTTATCATGCTCATGTTTCGGTACATGTATCTAAAAACTGTCCAAGCTGTGATAAACTATTCCGTAACCATTCTTGCTATATGCATCACACAAAGAACTGTTGTGAATTATACAGTAAGAAAaaagttatgaaaaaaaaaaagaatgttactatagaaattaataatgcaAAAAACAATCGTAAAATCAATGTAGGGCTTCGAGGAGCTACGTGCAAAGAGTGTATTTGTGATTATTGTGGCAAAACGTTTGCCAGAAAGAAATTCATTTGTGCACATATACAGATAGTCCATATGAGGAATACCCACCGTCCCTGCATTTATTGTGGAAAGCTGTTAGCATCAGCTCATATGTCAGAACATATGAAACAGCATAAGCCTGATTGTACCTTCACTTGTGAACAATGtggcataatattaaaaactaagttGGGATACAATCAACATATACGTTTACATACTGGAGAGAGACCCTACGAATGTAAGCAATGTGGGGAAACATTCTCAGCATCTTCAAGACGGTCAGAACATATACGGAAAGTTCacaaaacaaaagatataattcTAAAGCAGCAGTGTCACCTCTGTCCAGCCAAGTTCAGGTTGCCATATCGACTGAAAAGACACCTGAGGTCAGTCCACAATGATGACCAGGATCAAACTCCTCAGTTTGAATGTACTGTGGTGGACGAAACCGACTTTCCCGCGGCGTTGTGCTGCGCGTGCGCTAATAACGCCATATCGGCGTGGCAGTTCAGACACCTATGCCATGAGTCGCACAACCATTGGACTAAAATTACCGAGGCCCTGATGATACCAGAAAATCCAACTAAACAAGATAAGACCTTTTATATAACGTGTAATGGAACTGTCTTTAATGATTATGTGCCTGTTAGTCAGTCTCGAGAAGATGCTATCAAAAGACTGAATTTTTTGTCTGGTGCTAAACATAAAATTCGtgcgaaatataaaaagaaatgttccAAAAAGAGCGAAAACAAGTACAAGTGCAAGGATTGCGGTAAACAATTTGAAGTACCCTATTTCTTGAATCGACATTTGCTAAATTCTTCGGTACGCGCTTGCACATTGTGCGGGAAGGTTGtgttgaaagaaaaattaccAGTACATTTGGAGAGGTCTCACCAGCTTATGGTCGAATTTTGTGATATTTGCTATAAGTTATTTGATGATAGACTTCTTTTGGATCGCCATAAACAGATATTGCATGCAGATAGCAGCTTACAGTGCAATACCTGTAGGAACGGCTTCAAAAATGATCGATCCCTTAGAGCTCATATGTACACACATACCCTTTTTAACTGTTCATTGTGCAACAGCAGttttgaaaatagaaaatgttacTTACACCATAGGAACAATTGTCAAGGATCCAAATGTACgaatcaatatatttacgaATGTAACGACTGCGGGagcaaatatactaaaaaaccGTCTTTAAGAGTACACATAGTCcagaaacatttaaatgttCTACCATACATTTGCCAAATTTGTGGGAAACGTAGTTCTTCGAAGACCCACCACAAATCTCACGAATTAGTTCACAAgactgaaagaaaaatatatcagtgCTTCTGCGGCGCCAAGATGAGAACAGTCCACGGCTTTCAAATGCATCAGAGGATCCATTCTGGGGAGAAACCATATGAATGTCAAGAATGTGGGGACAGGTTTCTATCGGCTTCCAGAAGGTTGGATCATATAAAGAGGAAGCATAGACGGAAAAATCTTGGCTGTGATGAGTGTGACGCAAGATTTGTTAGACCTTCGGAGTTGAAGAAGCACTGGAGGACTGCCCATCATGTGCAAGAGGATCAATTGTTTCCACGAGGCCTGTGCGTGTCCTGCACTAGGGTAGCCGTGTCTGCTTCGGAATTCCGAATTTTTGTAACGAAATCACAGCGATTGTGGTCCAATTGTATAGACTCCCTTCACACTCTTCCAACTCTGAATACTTCCCAAAAATCTCTATATGCAATCGTTAGAGAAAACCTGTTGCTACAAACTGTCAATCATTTTGAAGGGAATGCAAAAGATTTGTTAGAACATTTAACTAACAGAATTGTGAAACGAAAGAATTTATTAGTGGAACGGAAACCTAGGCATCCTAGGACAGGACCAGCGTGCAGTTGCACAGATTGTGGCAAGAGCTTCCTTAGTCCATATTACCTAAATATGCATTTACGGAACAGTGGACAGAAGGAAGCTTGTTGGCTCTGTGGCGCCATGTTAACACGAGGGCAAGAAATGAAAGAGCATCTACGGAAAATACACAAAACcgaaatgtttatttgctCAGAATGTCCATTGCTTTTTAAAACTGACGTGGACAGAAAGCGTCAtgccaaaaaaaatcatgggCCCGGTGTCATGACGTGCGCAGATTGTGGCAGAACATTCCAGAGGAGTGCGTCTTTCGATGTGCACACACAAATGCACACAGTTCGTACATGTAGATCCTGTGGAGCACAGTTTACGAATCGTGGCTGTTACAGAGCGCACAGGTCCAAGTGTGAACCTGACGCTAAACCAGATTTGAAGACGATACCAAGAAACAGACGTTCTAATATCCGTGACCCGGCAACTTTCACTTGTGATTATTGTGGCAAGACCTACCATTCGCGTCcgcaattaaaaaatcatatactaTGGATTCACATGGATATACGACCTCATCAGTGTCAGTGGTGTGGAAAAAGGTTTTATACGCCAGCCCGTTTGGCCGAACACTCAGTAGTTCATACGAGAGTGAGGAATTTTGAATGTGATATCTGTGGTGCCAAGTTAGTGTCCAAAATGGCGGCAGTGTACCACAGGAGACGGCACACAGGTGAAAGACCATACGAATGCCCAGATTGTGGAGAAAAGTTTATATCTTCATCTCGTAGAACGGAGCATGCCAAGCGAAGACATAATAAAGGTTCCCGTATCCATTGCTCGGAATGTCTGGCGAGTTTTGTGAGGAATCATGAATTAAAGAAACATATGGACAAAGttcataataatgaaaatcatgttgttgtcaaaataaaaaagga
- Protein Sequence
- MQIVVMEGDLPEGVCPECSRSATNAAEFKLLCQAAAQQWDTTIALLHDLPTQCTDNKTVFAIFDKNKMIAINDMKKSYNHTTAALRLTKYLSKCPEPKKDSIYKCPNCDKSFSSPIKFSLHLKESPDLQRACYVCGAIVSHNSLLNHLIKKHKEKPFSCKKCTAVFRSYNQYMHHVETTHKYGRAFCGDCGRSFQSLNAYHAHVSVHVSKNCPSCDKLFRNHSCYMHHTKNCCELYSKKKVMKKKKNVTIEINNAKNNRKINVGLRGATCKECICDYCGKTFARKKFICAHIQIVHMRNTHRPCIYCGKLLASAHMSEHMKQHKPDCTFTCEQCGIILKTKLGYNQHIRLHTGERPYECKQCGETFSASSRRSEHIRKVHKTKDIILKQQCHLCPAKFRLPYRLKRHLRSVHNDDQDQTPQFECTVVDETDFPAALCCACANNAISAWQFRHLCHESHNHWTKITEALMIPENPTKQDKTFYITCNGTVFNDYVPVSQSREDAIKRLNFLSGAKHKIRAKYKKKCSKKSENKYKCKDCGKQFEVPYFLNRHLLNSSVRACTLCGKVVLKEKLPVHLERSHQLMVEFCDICYKLFDDRLLLDRHKQILHADSSLQCNTCRNGFKNDRSLRAHMYTHTLFNCSLCNSSFENRKCYLHHRNNCQGSKCTNQYIYECNDCGSKYTKKPSLRVHIVQKHLNVLPYICQICGKRSSSKTHHKSHELVHKTERKIYQCFCGAKMRTVHGFQMHQRIHSGEKPYECQECGDRFLSASRRLDHIKRKHRRKNLGCDECDARFVRPSELKKHWRTAHHVQEDQLFPRGLCVSCTRVAVSASEFRIFVTKSQRLWSNCIDSLHTLPTLNTSQKSLYAIVRENLLLQTVNHFEGNAKDLLEHLTNRIVKRKNLLVERKPRHPRTGPACSCTDCGKSFLSPYYLNMHLRNSGQKEACWLCGAMLTRGQEMKEHLRKIHKTEMFICSECPLLFKTDVDRKRHAKKNHGPGVMTCADCGRTFQRSASFDVHTQMHTVRTCRSCGAQFTNRGCYRAHRSKCEPDAKPDLKTIPRNRRSNIRDPATFTCDYCGKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECPDCGEKFISSSRRTEHAKRRHNKGSRIHCSECLASFVRNHELKKHMDKVHNNENHVVVKIKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00781193;
- 90% Identity
- iTF_00781193;
- 80% Identity
- -