Hrub067800.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- bab2
- Assembly
- GCA_963082715.1
- Location
- OY720462.1:1589611-1617106[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.1e-11 1.9e-08 36.2 0.0 1 39 349 388 349 392 0.90 2 4 2.4e-12 1.5e-09 39.7 0.1 1 39 403 441 403 444 0.95 3 4 1.4e-17 8.5e-15 56.5 0.0 2 45 459 503 458 503 0.96 4 4 7.5e-19 4.6e-16 60.5 0.0 1 44 510 554 510 555 0.96
Sequence Information
- Coding Sequence
- ATGGCAAGCCAACACTACTGTCTAAGATGGAACAACTATCAAAGTAATATGACGTCAGTGTTCCATCAACTTCTTCAGACAGAATCGTTTGTAGATGTTACTCTTGCTTGTAACGACTTATCGTTGAAGGCTCAcaagGTCGTTTTGTCGGCATGTTCGGCATATTTCCAGAAACTTCTTCTAGAAAATCCGTGTAAACATCCTACTATCATCATGCCACAAGATGTTTGTTTCTCAGATCTCAAGTTTATCATCGAGTTCGTGTACAAAGGAGAAATTGATGTCTCGCAGGCTGAACTACAGTCCCTGTTGAAAACTGCCGACCAGCTCAAAATCAAAGGCCTTTGCGAAGTCTCCGAAgacaaagaaaacaaaaaaacgcgTTGCGAATCACCTGATTTGCAAAATACACCCCCTAAGTTTCGACGGTTGTTGAACAAACGTCCTAGGTCTACTGAAAGTATACGAAAACCTTTGAAGAAAGAGTATGCAGAACGACTGGAGAGCATCACCGTAGATGATCCAGATGATATGCCAGTAGTCGAAGAAAAGGGAGCCATCAACGGGAAAAATATGACTGGACATGGACTGCTACCCTCAAATGCTCTTTTCCCGCAGCTTTGCGTGGACAATGAAGAATTTCCCCCGGAACCACCTGGGCCTGCAGCTACCCCTGTTCGGCATGTGGAGATGCACGAATGTTCACCACCTAGGACGCTACTCACAAATACGGAATGTTCGCAAAGGGGCGAGCTGATAGAAACGAGTCTTGGGGATGAACCCCcagtgaaaataaaattggaaacCCTTCGGTCCTTGGATCAGTCAGACACAATAGACATAGATAGTCATATGTCTAGTCACTCTTTGGGTAGCCATAGTGAGGAAGAACAAGGAATGCATACAATGATGATTACACCTGAACTTATGGGCCTAATTCCAACGTCTAGCTCCCATTCGGaattaagCAACGACGGACACCTACTAGTAAAAAGCAATGGTCACGTAGAATCCCACAGACATTCCGGTGGCCCCAAAACTTGGACACAAGAAGACATGGAGCTTGCATTAGACGCTTTAAGAAACCACAACATGAGCTTAACAAAAGCATCAGCAACTTACGGAATTCCTTCGACGACATTGTGGCAAAGGGCCCACCGACTAGGAATCGACACACCAAAGAAAGAGGGCCCTACGAAGTCTTGGACAGAAGACAACTTAAATTCCGCCTTAGAAGCTTTGAGAACAGGGACAATATCTGCCAATAAAGCCAGCAAAGCTTacggcatTCCTAGTAGCACGCTATACAAGATCGCCCGGCGTGAAGGTATCCGTCTGGCAGCCCCCTTCAACGCAGCACCCACAACGTGGAGTCAGGAAGACCTAGAACGCGCCTTGGAAGCGATCAGATCCGGGCAGACTTCTGTGCAGAGGGCGTCCACTGAATTTGGAATTCCTACGGGGACTCTATACGGAAGATGTAAGCGAGAGGGGATTGAATTGTCCAGGTCGAACCCGACTCCTTGGAGCGAGGATGCCATGGGAGAAGCTCTGGAAGCCGTCAGGGTAGGTCAGATGTCAATTAACCAAGCAGCTATCCACTACAACCTGCCATATTCGTCGCTGTACGGACGATTTAAGCGAGGAAAATACGACACGGAACCCTCAGACCATTCTGAAGGTCCTGGAGACCCAGTCATACAGTACCATACAGCTCAGGGTCAGTTTCAGCATCAAAATAGTTGA
- Protein Sequence
- MASQHYCLRWNNYQSNMTSVFHQLLQTESFVDVTLACNDLSLKAHKVVLSACSAYFQKLLLENPCKHPTIIMPQDVCFSDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEVSEDKENKKTRCESPDLQNTPPKFRRLLNKRPRSTESIRKPLKKEYAERLESITVDDPDDMPVVEEKGAINGKNMTGHGLLPSNALFPQLCVDNEEFPPEPPGPAATPVRHVEMHECSPPRTLLTNTECSQRGELIETSLGDEPPVKIKLETLRSLDQSDTIDIDSHMSSHSLGSHSEEEQGMHTMMITPELMGLIPTSSSHSELSNDGHLLVKSNGHVESHRHSGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDNLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSQEDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDTEPSDHSEGPGDPVIQYHTAQGQFQHQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767332; iTF_01040034; iTF_00872963; iTF_01040246; iTF_00873178; iTF_01039141; iTF_01039394; iTF_01040778; iTF_01041027; iTF_01225578; iTF_01104884; iTF_01104174; iTF_00768024; iTF_00469544; iTF_01229885; iTF_01229648; iTF_01275166;
- 90% Identity
- iTF_00767332; iTF_00469544; iTF_01225578; iTF_00768024; iTF_01275166;
- 80% Identity
- iTF_00767332;