Ning009342.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- bab2
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000530.1:379525-386905[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-12 3.8e-09 36.1 0.0 1 39 359 398 359 402 0.90 2 4 8.9e-13 1.3e-09 37.6 0.1 1 39 413 451 413 454 0.95 3 4 1.2e-18 1.7e-15 56.4 0.0 2 45 469 513 468 513 0.96 4 4 1.1e-19 1.7e-16 59.7 0.0 1 43 520 563 520 564 0.96
Sequence Information
- Coding Sequence
- ATGGCTGGGCAACATTACTGCCTAAGATGGAACAATTACCAAAGCAACATGACGTCTGTGTTCCATCAGCTGTTGCAAACGGAATCATTTGTGGACGTCACACTTGCGTGCAATGACCTTTCTTTAAAGGCACATAAGGTTGTGCTATCTGCTTGTTCATCATATTTTCAAAAATTACTACTTGAAAATCCATGCAAACATCCCACAATTATAATGCCGCAAGACGTGTGTTTTTCTGACCTAAAATTCATCATTGAGTTTGTGTACAAAGGAGAAATTGATGTGTCACAAGCGGAATTACAGTCGTTACTAAAGACAGCAGATCAACTAAAAATCAAAGGATTGTGCGAAGTATCCGATGACAAAGAAAATACCTCACAAGGTCGAGAATCGCCTGTGATAACGCAAAGACAGTTACCAAAATTCCGAAGATTATTAAATAATAAACGACCCCGATCTTCGGAAAATATTCGACGGTCGCTTAAAAAGGAAGAGCTTTCTGATAAATCAGAGTGCATAGATTGTGATGAACCGATAGATGAAGATAATGATATGCCAGTAATAGTAGAGGAACGAACAACGACAAATTCAAAAAACAACGGACAAACAAATATGACTGGACATGGCCTACTACCTGCTCAAGCTCTATTCCCTCAGTTGTGTGTTGACAACGAGGAATTTCCTCCCGAACCGCCAGGACCTGCCGCAACACCAGTACGACATGTTGAAATGCATGAGTGTTCGCCACCACGAACATTCCTCACAAATACAGAATCGTCACAAAGAGGAGAGTTAATAGAAACCAATTTGGGAAACGACACAAAAATTAAATTGGAAACATTAAAATCATTGGATCAATCTGATTCAATAGATATAGATAGCCATATGTCTAGTCATTCAATGGGGAGCCATAGTGAAGATGAAAAAGGAATGCACACGATGATGATCACACCGGAGTTTATGGGATTAATACCGACATCTAGCTCACATTCTGATATCAGTAACGAAGGCAATAATATGCAAAAGAATGGACATGCAGAATCACACAGACATTCGAGTGGACCAAAAACGTGGACTCAGGAAGACATGGAACTAGCCCTAGATGCTCTAAGAAACCACAACATGAGCTTGACAAAAGCATCTGCAACTTATGGTATTCCCTCTACAACATTATGGCAGAGAGCGCATCGACTTGGCATCGATACACCAAAGAAAGAAGGTCCAACAAAATCATGGACGGAAGATAGTTTAAACTCAGCTTTAGAAGCTCTACGGACCGGAACGATATCAGCCAATAAAGCGAGTAAAGCATTTGGCATTCCCAGTAGTACCTTGTATAAAATTGCACGACGAGAAGGCATTCGTTTAGCAGCGCCTTTCAATGCAGCGCCAACAACGTGGTCACAAGAAGATCTAGAGCGGGCACTAGAAGCGATTCGATCTGGTCAAACGTCAGTGCAACGAGCGTCAACCGAATTCGGAATTCCAACGGGCACTCTGTACGGCAGATGCAAACGAGAAGGAATTGAATTATCTAGATCGAATCCTACACCCTGGTCAGAAGATGCCATGGGCGAAGCTCTCGAAGCTGTTAGGGTTGGTCAGATGTCGATAAACCAAGCTGCAATCCATTATAATCTACCATATTCGTCCCTGTACGGACGGTTCAAAAGGGGGAAATACGATACCGACCATAGTGATAACGCAGACAGCCAGAGCGATCAAGTGATTGTAAATTACCACTCACAACACCACCATGGTAGTGTGTCGCAGTACCAGCATCAGAATAGTTGA
- Protein Sequence
- MAGQHYCLRWNNYQSNMTSVFHQLLQTESFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFSDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEVSDDKENTSQGRESPVITQRQLPKFRRLLNNKRPRSSENIRRSLKKEELSDKSECIDCDEPIDEDNDMPVIVEERTTTNSKNNGQTNMTGHGLLPAQALFPQLCVDNEEFPPEPPGPAATPVRHVEMHECSPPRTFLTNTESSQRGELIETNLGNDTKIKLETLKSLDQSDSIDIDSHMSSHSMGSHSEDEKGMHTMMITPEFMGLIPTSSSHSDISNEGNNMQKNGHAESHRHSSGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSQEDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDTDHSDNADSQSDQVIVNYHSQHHHGSVSQYQHQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00766313;
- 90% Identity
- iTF_01040246;
- 80% Identity
- iTF_01040246;