Pnig026252.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380346.1:12916810-12920890[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.1e-12 8.8e-09 36.5 0.0 1 39 261 300 261 304 0.90 2 4 5.6e-13 6.9e-10 40.0 0.1 1 39 315 353 315 356 0.95 3 4 3.2e-18 4e-15 56.8 0.0 2 45 371 415 370 415 0.96 4 4 2.1e-19 2.6e-16 60.6 0.0 1 43 422 465 422 467 0.96
Sequence Information
- Coding Sequence
- ATGTCTTCTTGTTTTCAGTCACTCCTAAAAACAGCCGACCAGCTGAAAATCAAGGGTCTGTGCGAAGTGTCAGAAGACAAAGAAAATAAAACTCAAGGCCGAGAGTCCCCGGCCCTCCAAAGAACACCTCCAAAGTTCAGACGACTGTTGAACAAGCGCCCCAGGTCTTCAGAGAGCATCCGCAAGCCCCTGAAGAAAGAGTATGCGGAGCGACTTGAAAGTATCACTGTAGAAGACACGACTGATGAAAATAATGATATGCCAGTGGTAGTGGAAACCAGAGGAAAGCATAACGGGCAAAATATGACTGGACATGGGCTGCTTTCTACACAAGCTCTGTTCCCCCAGCTGTGTGTGGACAATGAAGAGTTTCCTCCGGAGCCGCCTGGACCCGCGGCGACTCCCGTGCGTCACGTAGAGATGCACGAGTGCTCGCCGCCGAGGACGCTGCTCACCAACACCGAGTCATCACAGAGAGGGGAGTTAATAGAAACAAATCTAGGGGATGAACCCCCTGTGAAAATAAAACTTGAAACGTTAAGATCCTTGGATCAATCAGATACGATAGACATCGATAGTCATATGTCTAGTCACTCAATGGGAAGTCACAGTGAAGAGGAGCAAGGAATGCATACGATGATGATCACTCCTGAACTTATGGGTCTAATACCTACTTCTAGCTCACATTCCGAATTAAGTAATGAAGGTAACAACATGCAGAAAAGTAACGGCCATATGACATCAGAATCACATAGACACTCCGGCGGCCCCAAAACGTGGACACAAGAAGACATGGAACTCGCGTTAGATGCGTTAAGAAATCACAATATGAGTTTAACAAAAGCTTCAGCTACTTATGGAATCCCTTCAACGACCTTATGGCAAAGAGCACATCGACTAGGGATAGACACACCAAAGAAAGAAGGGCCTACAAAATCTTGGACGGAAGATAATTTGAATTCGGCCTTAGAAGCGCTTAGGACTGGCACGATATCAGCGAATAAGGCCAGCAAAGCTTATGGCATTCCCAGCAGTACCTTGTACAAAATAGCTCGACGCGAAGGTATTCGGCTGGCAGCCCCCTTCAATGCGGCGCCAACAACGTGGTCACAAGAAGACCTAGAGCGTGCTTTGGAAGCAATTCGTTCCGGGCAGACTTCAGTTCAAAGAGCTTCCACGGAGTTCGGTATTCCCACGGGAACGTTGTACGGGAGATGTAAGCGAGAAGGGATCGAATTATCCAGGTCTAATCCCACGCCTTGGAGCGAGGATGCTATGGGAGAAGCTCTGGAAGCTGTGAGGGTGGGTCAAATGTCAATCAACCAAGCAGCAATCCACTATAACCTACCCTACTCTTCGCTGTATGGACGGTTTAAACGCGGAAAGTACGACACCGAGCACAGCGACCACAGTGACGGGCCCGGCGACCCCGTCATCCAGTACCACGCCGGACAAGCGCAGTATCAGCACCAGAACAGTTGA
- Protein Sequence
- MSSCFQSLLKTADQLKIKGLCEVSEDKENKTQGRESPALQRTPPKFRRLLNKRPRSSESIRKPLKKEYAERLESITVEDTTDENNDMPVVVETRGKHNGQNMTGHGLLSTQALFPQLCVDNEEFPPEPPGPAATPVRHVEMHECSPPRTLLTNTESSQRGELIETNLGDEPPVKIKLETLRSLDQSDTIDIDSHMSSHSMGSHSEEEQGMHTMMITPELMGLIPTSSSHSELSNEGNNMQKSNGHMTSESHRHSGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDNLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSQEDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDTEHSDHSDGPGDPVIQYHAGQAQYQHQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00766313;
- 90% Identity
- iTF_00766313;
- 80% Identity
- -