Pcup038729.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- -
- Assembly
- GCA_963942605.1
- Location
- OZ012724.1:20062012-20078842[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.2e-12 1e-08 36.3 0.0 1 39 299 338 299 342 0.90 2 4 3.3e-13 8e-10 39.9 0.1 1 39 353 391 353 394 0.95 3 4 1.9e-18 4.6e-15 56.6 0.0 2 45 409 453 408 453 0.96 4 4 1.2e-19 3e-16 60.4 0.0 1 43 460 503 460 505 0.96
Sequence Information
- Coding Sequence
- ATGGGGATGCTGTGCCGTGCTGCAGCTTCGCTAGCGGCGAAAGTGACGCGGGGCTTAATCAATACTCGGCTGGGTTCAAGGGCACTGGAGGGCTGCAGGGCTCGGGGATGGCGGGAAGAGATGAGAGCCTGTAGGTCCCTCCTCAAGACAGCCGACCAACTAAAAATCAAGGGCCTGTGCGAAGTGTCCGAAGacaaagaaaacaacaaaaccCAAGGTCGCGAATCCCCGGTCCTCCAAAGAACACCTCCAAAGTTCCGGCGACTGTTGAACAAACGCCCCAGGTCATCGGAGAGTATCCGCAAGCCGCTGAAGAAGGAGTATGCAGAGCGACTAGAAAGTATCAGTGTAGACGACACCGATGAAAATAATGATATGCCAGTGGTAGTAGAGAGCAGAGGAAAACACAACGGGCAAAATATGACTGGCCATGGGCTGCTACCTACACAAGCTCTGTTCCCCCAGCTGTGTGTGGACAATGAGGAATTTCCTCCAGAGCCTCCAGGTCCTGCAGCCACCCCTGTGCGGCACGTGGAGATGCACGAGTGTTCACCCCCGAGGACGCTGCTCACCAACACCGAGTCGTCACAGAGAGGGGAGTTAATAGAAACGAATCTAGGGGATGAACCCCCTGtgaaaataaaacttgaaaCCTTAAGGTCCTTGGATCAGTCAGACACGATAGACATCGATAGTCATATGTCTAGTCACTCAATGGGTAGTCATAGTGAAGAGGAGCAAGGGATGCATACGATGATGATAACCCCTGAACTTATGGGCCTAATACCTACTTCTAGTTCACATTCCGAATTAAGTAACGAAGGCAACAACATGATGAAAAGCAACGGCCACATGACAGAATCACACAGGCACTCGGGCGGGCCGAAAACGTGGACACAAGAAGACATGGAACTCGCGTTAGATGCTTTAAGAAACCACAATATGAGTTTAACAAAGGCGTCAGCAACTTACGGAATTCCTTCAACGACTTTATGGCAAAGAGCACATCGATTGGGGATAGACACACCAAAGAAAGAGGGGCCTACAAAATCCTGGACGGAGGATAATTTAAATTCGGCCTTGGAAGCGCTTAGGACTGGCACGATATCCGCTAATAAGGCCAGCAAAGCTTACGGCATTCCCAGCAGTACCTTGTACAAAATAGCCCGACGGGAAGGCATCCGCCTGGCCGCCCCATTCAACGCCGCGCCCACCACGTGGTCGCAGGAAGACCTGGAGCGCGCGTTGGAAGCGATTCGTTCCGGACAGACTTCAGTGCAGAGAGCGTCTACAGAGTTCGGCATACCCACGGGGACGCTATACGGGAGATGTAAGCGGGAAGGGATTGAGCTGTCCAGGTCCAACCCCACGCCTTGGAGCGAGGATGCTATGGGGGAGGCGCTCGAAGCTGTGAGAGTGGGCCAAATGTCAATCAACCAGGCAGCAATCCACTACAACCTTCCTTACTCGTCACTCTACGGTCGATTTAAACGCGGGAAATACGACACCGAGCACAGCGACCACTCCGACGGACCTGGTGATCCCGTCATCCAGTACCACGCCGGCCAAGCGCAGTACCAACATCAGAACAGTTGA
- Protein Sequence
- MGMLCRAAASLAAKVTRGLINTRLGSRALEGCRARGWREEMRACRSLLKTADQLKIKGLCEVSEDKENNKTQGRESPVLQRTPPKFRRLLNKRPRSSESIRKPLKKEYAERLESISVDDTDENNDMPVVVESRGKHNGQNMTGHGLLPTQALFPQLCVDNEEFPPEPPGPAATPVRHVEMHECSPPRTLLTNTESSQRGELIETNLGDEPPVKIKLETLRSLDQSDTIDIDSHMSSHSMGSHSEEEQGMHTMMITPELMGLIPTSSSHSELSNEGNNMMKSNGHMTESHRHSGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDNLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSQEDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDTEHSDHSDGPGDPVIQYHAGQAQYQHQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00766313;
- 90% Identity
- iTF_00766313;
- 80% Identity
- -