Hruf052724.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596288.1:1320521-1328592[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.5e-11 1.3e-08 36.2 0.0 1 39 323 362 323 366 0.90 2 4 2.7e-12 1e-09 39.8 0.1 1 39 377 415 377 418 0.95 3 4 1.6e-17 5.9e-15 56.5 0.0 2 45 433 477 432 477 0.96 4 4 8.4e-19 3.2e-16 60.6 0.0 1 44 484 528 484 529 0.96
Sequence Information
- Coding Sequence
- ATGGACTGTATCTATCGGTACTTCCCTCACTGCGAAGATATACCAAGAGAACATTTTAGAATAAGTTGTGAAATCCCTGAAAAACATAATCTTTCTTGGCAAACACTGAGTCTTCTAGCAGGATTCAGTCCCGGCACACAAGGCCAGAACAACGCAGGGCTGCGGGCGAATGTTCCAGCCTTCGTTAAGGCAAAACTGGCCCTCGAGCAGTCCAGATTTCAATCCTTTGGACCACAAATTGTGTCCTTGTTGAAAACTGCCGACCAGCTCAAAATCAAAGGCCTTTGCGAAGTGTCTGAAGACAAAGAAAACAAGAGAACGCGTTGTGAATCGCCCGGTTTACAAAATACACCTACTAAATTTCGACGATTACTTAACAAACGTCCTAGATCTACTGAAAGTATACGAAAGCCTTTGAAGAAAGAGTATGCCGAACGACTGGAGAGCATCTCGGTAGACGATCCAGATGATATGCCAGTGGTAGAAGAGAAGGGAGCTATCAACGGGAAAAATATGACTGGACATGGATTGCTACCCTCAAATCTGTGCGTGGACAACGAAGAATTTCCCCCAGAACCACCAGGTCCTGCAGCTACCCCCGTTCGGCATGTGGAGATGCACGAATGTTCCCCACCTAGAACACTACTCACCAACACCGAATGTTCGCAAAGGGGCGAGCTGATAGAAACAAGCCTTGGGGATGAACCCCCGGTGAAAATAAAATTGGAAACCCTTCGATCATTGGATCAATCGGACACAATAGACATAGATAGCCATATGTCTAGTCATTCTATGGGTAGCCACAGCGAAGAAGAACAAGGGATGCATACGATGATGATTACCCCTGAGCTTATGGGCCTAATTCCAACGTCTAGCTCGCATTCTGaattaagcaACGATGGCCTCCTTCTCAAAAGCAACGGGCACGTAGAATCACATAGACATTCCGGCGGTCCCAAAACTTGGACACAAGAGGACATGGAGCTTGCATTAGATGCTTTAAGAAATCACAACATGAGTTTAACAAAAGCATCAGCAACTTACGGAATCCCTTCGACAACATTGTGGCAAAGGGCACACCGGCTAGGAATCGACACACCAAAAAAAGAAGGCCCTACGAAATCTTGGACAGAAGACAACTTAAATTCCGCCTTAGAGGCCCTAAGGACTGGGACAATATCTGCGAATAAAGCCAGCAAAGCTtacgGTATTCCTAGTAGCACGCTATACAAAATCGCCCGCCGCGAGGGTATCCGCCTGGCAGCCCCTTTCAACGCAGCTCCCACCACGTGGAGTCAAGAAGACCTGGAGCGCGCTTTAGAAGCGATCCGATCTGGCCAGACTTCTGTGCAGAGGGCGTCCACAGAATTTGGAATTCCTACGGGGACTCTATACGGCAGATGTAAGCGAGAGGGGATTGAATTGTCCAGGTCGAATCCAACCCCTTGGAGCGAGGATGCCATGGGGGAAGCTTTGGAAGCCGTCAGGGTGGGTcagatgtcaataaatcaagCAGCTATCCACTACAACCTGCCATATTCGTCGCTGTACGGACGATTTAAGCGAGGAAAATACGACACGGAACCTTCAGACCATTCCGAAGGTCCTGGGGACCCAGTCATACAATACCATACAGCTCAGGCCCAGTTTCAGCATCAAAATAGTTGA
- Protein Sequence
- MDCIYRYFPHCEDIPREHFRISCEIPEKHNLSWQTLSLLAGFSPGTQGQNNAGLRANVPAFVKAKLALEQSRFQSFGPQIVSLLKTADQLKIKGLCEVSEDKENKRTRCESPGLQNTPTKFRRLLNKRPRSTESIRKPLKKEYAERLESISVDDPDDMPVVEEKGAINGKNMTGHGLLPSNLCVDNEEFPPEPPGPAATPVRHVEMHECSPPRTLLTNTECSQRGELIETSLGDEPPVKIKLETLRSLDQSDTIDIDSHMSSHSMGSHSEEEQGMHTMMITPELMGLIPTSSSHSELSNDGLLLKSNGHVESHRHSGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDNLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSQEDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDTEPSDHSEGPGDPVIQYHTAQAQFQHQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00766313;
- 90% Identity
- iTF_00766313;
- 80% Identity
- -