Pcha003748.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- lolal
- Assembly
- GCA_002278615.1
- Location
- CM008240.1:982702-997275[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-12 4e-09 36.3 0.0 1 39 299 338 299 342 0.90 2 4 1.7e-13 3.1e-10 39.8 0.1 1 39 353 391 353 394 0.95 3 4 1e-18 1.8e-15 56.6 0.0 2 45 409 453 408 453 0.96 4 4 4.7e-20 8.5e-17 60.9 0.1 1 43 460 503 460 505 0.96
Sequence Information
- Coding Sequence
- ATGCCACAAGATGTTTGTTTTTCTGACCTCAAATTCATCATCGAGTTTGTTTACAAAGGAGAAATTGATGTGTCCCAAGCTGAATTACAGTCCCTTCTAAAAACAGCAgaccagttaaaaataaaaggctTATGCGAAGTTTCGGAGGACAaagaaaacacaaataataatatacatagtaTTAAAGGCCGGGAATCACCAATACCTCTACTAGCACCATTACCAAAATTTAGaagatttttaaacaaacgaCCAAGGTCCTCTGAAAGTATAAGAAAACCATTTAAGAAAGAATACGCGGATCGAGCAGCTGCAGAAACAATATCTATCGATGACCAGACAAGTGAAAACAATGATATGCCAGTTGTAGTGGAAGAACGGACGaataaatcgttaaaaattaaCGGGCATACAAATATGACTGGACATGGCCTACTACCCACACagGCCTTGTTCCCTCAATTATGTGTGGATAGTGAAGAATTTCCGCCAGAACCCCCAGGTCCGGCGGCAACCCCAGTTAGACATGTTGAAATGCATGAATGTTCACCCCCTAGGACATTACTTACAAATACAGAATCATCACAGAGAGGGGAGTTAATAGAAACAAATTTAGGGGATGATCCGCcggtcaaaataaaattggaaacATTAAGGTCGTTAGATCAATCCGATACAATAGACATCGATAGTCATATGTCTAGTCACTCGTTGGGTAGTCACAGTGAAGAAGAACAAAGTATGCATACAATGATGATAACACCAGAACTTATGGGCCTCATACCAACGTCTAGTTCACATTCTGatataagTAATGAAGCAAAAccctttcaaaaaataaatggccATAGTGTTTCGGAATCCCATCGACATTCTGGGGGACCCAAGACGTGGACGCAAGAAGATATGGAATTAGCGTTAGATGCTTTAAGGAATCATAATATGAGTTTAACtaagGCTTCAGCGACTTACGGAATTCCATCAACAACTTTATGGCAACGCGCACATCGACTTGGCATAGACACACCAAAGAAAGAAGGCCCAACAAAATCATGGACGgaggataatttaaattcagcaTTAGAAGCTTTACGAACAGGAACAATATCAGCAAATAAAGCCAGTAAAGCATACGgcaTTCCCAGTAGTACCTTGTATAAAATAGCGCGACGAGAAGGCATACGTTTAGCAGCACCTTTTAACGCAGCACCAACAACATGGTCCCAAGAAGACCTTGAAAGAGCTTTAGAGGCGATTCGATCAGGACAAACATCTGTTCAAAGGGCGTCCACGGAATTTGGTATTCCTACGGGGACACTGTATGGAAGATGTAAGCGGGAAGGTATTGAGTTATCTAGATCGAATCCGACACCTTGGTCAGAGGATGCAATGGGGGAAGCTCTCGAAGCAGTCAGagTCGGTCAAATGTCAATAAACCAAGCAGCTATCCACTACAACCTCCCCTATTCATCTCTTTACGGTCGATTCAAACGCGGTAAATACGAGACAGAACACGGCGATAACCCAGACAGTCAAAGTGATCAAGTAATTGTGCAATATCAACAACATCACCACGCGAATGTATCACAATATCAACATCAGAACAGTTGA
- Protein Sequence
- MPQDVCFSDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEVSEDKENTNNNIHSIKGRESPIPLLAPLPKFRRFLNKRPRSSESIRKPFKKEYADRAAAETISIDDQTSENNDMPVVVEERTNKSLKINGHTNMTGHGLLPTQALFPQLCVDSEEFPPEPPGPAATPVRHVEMHECSPPRTLLTNTESSQRGELIETNLGDDPPVKIKLETLRSLDQSDTIDIDSHMSSHSLGSHSEEEQSMHTMMITPELMGLIPTSSSHSDISNEAKPFQKINGHSVSESHRHSGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDNLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSQEDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYETEHGDNPDSQSDQVIVQYQQHHHANVSQYQHQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00766313;
- 90% Identity
- iTF_01229885;
- 80% Identity
- iTF_01229885;