Basic Information

Insect: Nebria brevicollis
Gene Symbol: bab2
Assembly: GCA_944739395.1
Location: CALYJC010000405.1:69968-76287[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.6e-12 7.3e-09 36.1 0.0 1 39 362 401 362 405 0.90

2 4 1.3e-12 2.6e-09 37.6 0.1 1 39 416 454 416 457 0.95

3 4 1.6e-18 3.3e-15 56.4 0.0 2 45 472 516 471 516 0.96

4 4 1.6e-19 3.2e-16 59.7 0.0 1 43 523 566 523 567 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.6e-12	7.3e-09	36.1	0.0	1	39	362	401	362	405	0.90
2	4	1.3e-12	2.6e-09	37.6	0.1	1	39	416	454	416	457	0.95
3	4	1.6e-18	3.3e-15	56.4	0.0	2	45	472	516	471	516	0.96
4	4	1.6e-19	3.2e-16	59.7	0.0	1	43	523	566	523	567	0.96

Sequence Information

Coding Sequence: ATGGCTGGGCAACATTACTGCCTAAGATGGAACAATTACCAAAGCAACATGACGTCTGTGTTCCATCAGCTGTTGCAAACGGAATCATTTGTGGACGTCACACTGGCGTGCAATGACCTTTCTTTAAAGGCACATAAGGTTGTGCTATCTGCTTGTTCTTCATATTTCCAAAAATTACTTCTTGAAAACCCATGCAAACATCCCACAATTATAATGCCGCAAGACGTGTGTTTTTCTGACCTAAAATTCATCATTGAGTTTGTGTACAAAGGAGAAATTGATGTGTCACAAGCGGAATTACAGTCGTTACTAAAGACAGCAGATCAACTAAAAATCAAAGGCTTGTGCGAAGTATCCGATGAGAAAGAAAATACCTCACAAAGTCGAGAATCACCCGTGATAACGCAAAGACAGTTACCAAAATTCCGAAGATTATTAAATCATAAACGACCCCGATCTTcggaaaatcaaaatattcgaCGACCACTGAAGAAGGAAGAACTTTCTGATAAATCAGAGTGCATAGATTGCGATGAACCGATAGATGAAGATAATGATATGCCAGTAATAGTAGAGGAACGAACAACGACAAATTCAAAAAACAACAACGGACATACAAATATGAGTGGACATGGCCTACTACCTGCtcaaGCTCTATTCCCTCAGTTGTGTGTTGACAACGAGGAATTTCCTCCCGAACCGCCAGGACCTGCCGCAACACCAGTACGACACGTGGAAATGCATGAATGTTCTCCACCACGAACATTTCTCACAAATACAGAGTCGTCACAAAGAGGAGAGTTAATAGAAACTAATTTGGGAAACgacacaaaaattaaattggaaACCCTAAAATCATTGGATCAATCCGATTCGATAGATATAGATAGTCATATGTCTAGTCATTCAATGGGGAGCCATAGTGAAGATGAAAAAGGAATGCACACAATGATGATCACCCCGGAATTCATGGGATTAATACCGACGTCTAGCTCACATTCTGATGTCAGTAACGAAGGCAACAATATGCAGAAGAATGGACATTCAGAATCACACAGACATTCGAGTGGACCGAAAACGTGGACTCAGGAAGATATGGAATTGGCTCTAGATGCTCTAAGAAATCACAATATGAGTTTAACAAAAGCATCTGCAACTTATGGTATTCCCTCTACAACATTATGGCAAAGAGCGCATCGGCTTGGTATCGATACACCAAAGAAAGAAGGACCAACGAAATCTTGGACGGAAGATAGTTTAAATTCAGCTTTAGAAGCTTTGCGAACCGGAACGATATCAGCCAATAAAGCGAGTAAAGCATTCGGCATTCCCAGTAGTACCTTGTATAAAATTGCACGGCGAGAAGGCATTCGTTTAGCAGCACCTTTCAATGCAGCGCCAACAACGTGGTCACAAGAAGATCTAGAGCGAGCACTGGAAGCGATTCGATCTGGTCAAACATCGGTGCAACGAGCGTCCACCGAATTCGGAATTCCAACGGGCACACTATACGGTAGATGCAAACGAGAAGGAATTGAATTATCTAGATCGAATCCTACACCCTGGTCAGAAGATGCCATGGGCGAAGCCCTTGAAGCTGTTAGGGTTGGCCAAATGTCGATAAATCAAGCCGCAATACATTATAATCTTCCATATTCGTCCTTGTACGGAAGGTTCAAAAGGGGGAAATACGATACCGACCATAGTGATAACGCAGACAGCCAAAGCGATCAAGTGATAGTAAATTATCACTCCCAACACCACCACCATGGCAGTGTGTCGCAGTACCAGCATCAGAATAGTTGA
Protein Sequence: MAGQHYCLRWNNYQSNMTSVFHQLLQTESFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFSDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEVSDEKENTSQSRESPVITQRQLPKFRRLLNHKRPRSSENQNIRRPLKKEELSDKSECIDCDEPIDEDNDMPVIVEERTTTNSKNNNGHTNMSGHGLLPAQALFPQLCVDNEEFPPEPPGPAATPVRHVEMHECSPPRTFLTNTESSQRGELIETNLGNDTKIKLETLKSLDQSDSIDIDSHMSSHSMGSHSEDEKGMHTMMITPEFMGLIPTSSSHSDVSNEGNNMQKNGHSESHRHSSGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSQEDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDTDHSDNADSQSDQVIVNYHSQHHHHGSVSQYQHQNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00766313;
90% Identity: iTF_01040246;
80% Identity: iTF_01039394;