Basic Information

Gene Symbol
nfxl1
Assembly
GCA_958496185.1
Location
OY292305.1:1072066-1074540[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1 2.5e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 18 0.026 6.4e+02 1.0 0.2 4 10 169 175 168 176 0.96
3 18 1.6e-07 0.0038 17.6 15.9 3 19 186 202 185 202 0.95
4 18 6.2e-07 0.015 15.7 12.1 1 19 237 255 237 255 0.93
5 18 0.62 1.5e+04 -3.4 1.5 6 10 280 284 279 284 0.83
6 18 3e-10 7.5e-06 26.3 14.5 1 19 290 308 290 308 0.99
7 18 8.1e-07 0.02 15.4 18.3 3 19 345 361 344 361 0.93
8 18 0.55 1.4e+04 -3.3 0.5 7 11 365 369 365 369 0.87
9 18 4.9e-07 0.012 16.1 19.2 1 18 395 412 395 413 0.97
10 18 4.5e-09 0.00011 22.6 15.9 1 19 422 440 422 440 0.99
11 18 5e-05 1.2 9.6 5.1 10 19 489 498 486 498 0.90
12 18 0.0088 2.2e+02 2.5 6.9 3 11 509 517 508 518 0.86
13 18 0.16 3.8e+03 -1.5 3.5 14 18 547 551 547 552 0.87
14 18 0.076 1.9e+03 -0.5 0.4 7 12 567 572 567 572 0.84
15 18 1.5e-06 0.038 14.5 4.1 1 11 588 598 588 599 0.97
16 18 0.38 9.3e+03 -2.8 1.6 15 18 613 616 612 617 0.83
17 18 9.9e-05 2.4 8.7 15.3 4 18 630 645 628 646 0.85
18 18 6.3e-06 0.16 12.5 10.3 1 16 687 701 687 707 0.92

Sequence Information

Coding Sequence
aTGGCACGAAGGTACCGGGATGCAGCCGCAAAATTACATCAAAACGTCCAGAAACACTTAAAGGAAATGAAAGACGTTTCTTCATCAGAAGATGAGGAACCCTTCGAATCTAGTGTACTGGAAGGAGTGTTCCAAACATATTGGAGAGGTGGCGGCGATACTCAAATGCTGAATCGCACTAAGAACATGCTAGAAGAGGCAATCAGCGGCCGGTCCGTCACTTGCCTTATTTGTATTGGTTCTATCAAGCGAGCAGACGCTATCTGGACTTGTGAGGACTGCCACTGCTATTTTCACCTATCCTGTATTCAGAAGTGGTCGAATGACAGTATAAGTTTGAGAAGTGAGGAGACCCACGCGCCTATTACTGTGTTTGTTCCCAAAAAAGTTGAGTGGTGTTGTCCCAAGTGTCGACACTCGTATAGCAAAGAAGAAATACCGCGTAAATACAGATGTTTCTGTGGCAAAGCTGATAATCCACCTCAGCATCCTTGGTTGATTCCACATTCGTGTGGAGAAGTATGTGGAAAGAGGCTATCCTTGAGTGACAATTGTAAACATAAATGTCTATTACTCTGTCACCCTGGACCTTGTCCACCATGTCCACAAACTGTCAATGGAGCCTGTTACTGTGAGAAGGAACGTAAGAGAGTTAGGTGTAGTGCAGCAAAATGGTCCTGTGGCCAACAGTGCAAAAGAATTCTACTTTGTAATTCTCACAAATGTGAAAATATCTGTCATGAAGACGAATGCCCTCCATGTAGCTATACGAGTGAGCAGCCATGCCAATGTGGCCATGAACGAACAAAAAGGCCATGCAACAACCCTTTCTGGCAATGCAAACGGCCTTGTAATAAACCATTCTCTTGTGGCTACCACAAATGCGAAAAAATATGCCATTCTGGTCCCTGTGGGACATGCCCAAATTCTGGCTTACGTTCTTGTCCGTGTGGTGCTGACCAGCGCTATGTACAGTGTCCGGATGTCATGGAACCTTGTTTAggtacatgtaataaaaaacatgatGATTGTGAGCACAGTTGCCCTGAGAAATGCCATAAAGGCCCATGTCCTCCATGTCAGGTTCTGATACAAAAAAAGTGTCATTGTAATGCACACACTCGTTCACTGCCCTGCAGCAAGGACTATAAGTGTGATACAAAGTGCCGTGGTACTAGGCCATGTGGGAAACACACATGTGGAAGAAAATGTTGTAATGGGAACTGCCCTCCATGTGAAAAAGTATGTGATAAACCACTTCAGTGTGGCCGTCATAAGTGCACTATGGTTTGCCATCATGGTCCATGCTACCCTTGTCCAAGGGAATCAAAAATAACATGTAGGTGTAAGGAAACCTATGTTACTGTTCCGTGTGGCAGAGAGAAACAGATTAAACCACCAAAATGCCATTTGCCCtgcaaatttaaatacaaatgtgGACATATAGATGAAAACAAACACTTTTGCCACTTTGGAGACTGTCCACCTTGTAAAGCAATTTGTTGTAAATCTTATCCGAATTGCACCCACAACTGTAAGGCAACATGCCATGCATATGTTGCTGTTGTCTTCAAACAAGTGGAGAAACCTGCAACACCTTGGGAAATAGAACCACCAAAGACAAAAATTCTTAACTTAGATTGTCCACCGTGTGAAACACTGGTCCCTGTTATATGCTTTGGTGAGCATGAAACAGAAGAACAGCCTTGCCATTCTGCTAAACGTCGTTGCTGTGGTAGAAAATGTAACCGGCCACTGTCTTGCGGTAATCACACTTGTGCTTTACTCTGCCACTTGTACTCTCCAAATCCTGACTATCCAAATGTGCCTTATAGTTGTAAGCCTTGTGATAGGGAGTGTCTCATAAGCCGTCCAGAGAAGTGTACACATAAGTGTGCCATACGGCAATGCCACCCAGGCCCATGCCCACCCTGTGAAGTGCTAGAGCGTGTTCCATGTAACTGTGGTCTCACTGAACTATACTTACGTTGCCGAGAGCTCTCTACAGCTACTGAAGTCACATTGTCATGTAAACAGCAGTGCCCAAAGAATTTGGAATGTGGACATCGTTGTCGCAACACCTGTCATGTTGGTAAATGTTCACAAGCACAGATTTGCACCAAGAAAACTAAGGTACACTGCGCTTGTGGTAATTTGAAAAAGGAATTCCCTTGCAATATCGTAAGAAATGGAGAGGCAAAAGTTCAATGTGATGTATCTTGTGAAGAAAAGAAGGTTGCAGCAAAATTAGAGGCTGAGAAAGAAGCACGAAGGCTGAAGGAGATAGAGGAAGAAAGAAACCGCAAGGAACTCGCCGAATATGAATGGAAATTGAGCggtaaaaagaaaaagtataagGAAAAGAAAATTGTTGCCACCAAAGATAATAGAAATTGGTTGCAAAAGTACTGGGTTCCTATTTTATCACTTTTGATGGCCATACTGGCAATAGTATATTGCATTCTTTATatgtaa
Protein Sequence
MARRYRDAAAKLHQNVQKHLKEMKDVSSSEDEEPFESSVLEGVFQTYWRGGGDTQMLNRTKNMLEEAISGRSVTCLICIGSIKRADAIWTCEDCHCYFHLSCIQKWSNDSISLRSEETHAPITVFVPKKVEWCCPKCRHSYSKEEIPRKYRCFCGKADNPPQHPWLIPHSCGEVCGKRLSLSDNCKHKCLLLCHPGPCPPCPQTVNGACYCEKERKRVRCSAAKWSCGQQCKRILLCNSHKCENICHEDECPPCSYTSEQPCQCGHERTKRPCNNPFWQCKRPCNKPFSCGYHKCEKICHSGPCGTCPNSGLRSCPCGADQRYVQCPDVMEPCLGTCNKKHDDCEHSCPEKCHKGPCPPCQVLIQKKCHCNAHTRSLPCSKDYKCDTKCRGTRPCGKHTCGRKCCNGNCPPCEKVCDKPLQCGRHKCTMVCHHGPCYPCPRESKITCRCKETYVTVPCGREKQIKPPKCHLPCKFKYKCGHIDENKHFCHFGDCPPCKAICCKSYPNCTHNCKATCHAYVAVVFKQVEKPATPWEIEPPKTKILNLDCPPCETLVPVICFGEHETEEQPCHSAKRRCCGRKCNRPLSCGNHTCALLCHLYSPNPDYPNVPYSCKPCDRECLISRPEKCTHKCAIRQCHPGPCPPCEVLERVPCNCGLTELYLRCRELSTATEVTLSCKQQCPKNLECGHRCRNTCHVGKCSQAQICTKKTKVHCACGNLKKEFPCNIVRNGEAKVQCDVSCEEKKVAAKLEAEKEARRLKEIEEERNRKELAEYEWKLSGKKKKYKEKKIVATKDNRNWLQKYWVPILSLLMAILAIVYCILYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2