Atra016893.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- nfxl1
- Assembly
- GCA_032362555.1
- Location
- CM063571.1:666081-668552[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1 2.8e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 20 0.032 9e+02 0.7 0.4 4 10 169 175 168 175 0.96 3 20 1.5e-07 0.0043 17.7 15.9 3 19 186 202 185 202 0.95 4 20 3.4e-09 9.5e-05 23.0 13.1 1 19 237 255 237 255 0.93 5 20 0.84 2.3e+04 -3.9 1.9 6 10 280 284 279 284 0.83 6 20 1.6e-10 4.5e-06 27.2 14.0 1 19 290 308 290 308 0.99 7 20 8.1e-07 0.022 15.4 18.3 3 19 345 361 344 361 0.93 8 20 1 2.8e+04 -5.3 2.2 5 10 384 389 384 389 0.88 9 20 2.4e-07 0.0066 17.1 16.3 1 18 395 412 395 413 0.97 10 20 2.5e-10 7e-06 26.6 13.0 1 19 422 440 422 440 0.99 11 20 3.2e-05 0.89 10.3 4.3 9 19 488 498 486 498 0.90 12 20 0.001 29 5.4 8.6 1 12 508 518 508 518 0.96 13 20 0.19 5.2e+03 -1.8 3.3 14 18 547 551 547 552 0.85 14 20 0.076 2.1e+03 -0.5 0.4 7 12 567 572 567 572 0.84 15 20 1.6e-06 0.044 14.4 4.7 1 11 588 598 588 599 0.97 16 20 0.14 3.8e+03 -1.3 1.9 15 18 613 616 612 617 0.83 17 20 9.5e-05 2.6 8.7 15.7 4 18 630 645 628 646 0.82 18 20 1 2.8e+04 -6.5 3.4 9 13 652 656 652 656 0.71 19 20 4.4e-05 1.2 9.8 14.1 1 18 687 706 687 707 0.87 20 20 0.92 2.6e+04 -4.0 1.2 6 10 736 740 735 740 0.86
Sequence Information
- Coding Sequence
- ATGGCCCGTCGTTACCGAGATGCGGCTGCCAAATTGCAACAAAATGTGCGGAAGCATTTGGATGTGATGAAAGACCTTTCTTCCTCTGAAGATGAGGAGCCTTTTGAGTCTACTGTCCTCGAAGGTGTGTTCCAGAGTTATTGGCGAGGTGGAGGGGACACACAATTGTTAAACCGGACGAAAAATCTCTTGGAAGAAGCAATAAGTGGCCGACCAATTACTTGCCTTATTTGCATAGGAAGTATAAAACGATCTGATGCTATTTGGACTTGTAGCCATTGCCACTGTTATTTCCATCTATCTTGCATACAGAAATGGTCAAACGACAGTATCAGCTTGAGAACCGAAGACACACAAGGCCCAATTTCTGTAGTAAAACCAAAGAAAATAGAATGGTGCTGTCCAAAATGCCGATTTTCGTATTCTAAGGAAGAAATACCCCGTAAGTACCgttgtttttgtgaaaaaacTGATGACCCACCTCTTCACCCTTGGTTGCTACCTCATTCTTGTGGAGAGGTTTGTGAAAAGAGATTGTCTTCAGGAGATAATTGTAAACACAAATGTCTGCTACTTTGCCATCCTGGTCCATGCCCTCCGTGCCCCCAGACTGTCAATGGAGTCTGTTATTGTGAGAAAGAACGGAAAAAAGTTAGATGTAGTGCTGCTAAATGGTCTTGTGGTCAGCAGTGCAAGAAGACATTGTTTTGTAACTCACACAAGTGTGAAAATATCTGTCACGAGGGAGACTGTCCCCCGTGCACTTATACCAGTGTACAGACATGTCAATGTGGCAGCGAGAAGGTCAAGAGACCCTGTAATGACCCTTTTTGGCAGTGCAAGAAACCATGCAATAAACCTTACTCATGTGGCTATCATAAATGTGAAAAAGTCTGTCATGCTGGGCCGTGTGGGTCTTGCCCCAACTCCGGTACGCGGTCTTGTCCCTGTGGAGCTAATCAACGCTTTGTACAATGCCCTGATGTTATGGAAACTTGCCTTGGAACTTGTAATAAGAAGCACGAGAACTGTGAACATAGTTGCCCTGAAAAATGTCATAAAGGACCGTGCCCACCGTGCCAAGTGCTGGTCCAAAAGAAGTGTCTTTGCTCTGCTCATGAGCGCTCACTCCCATGTAGCAAGGATTATAAGTGTGAGACAAAATGCCGAGGCACCAGGCCTTGTGGCAAACATGCATGTGCACGTAAATGCTGCAATGGTAACTGCCCCCCATGTGAGAAACCATGTGATAAACCGCTGCAATGTGGCCGGCATAAATGCACCATGGTCTGTCATCGAGGCCCTTGCTACCCGTGCCCCCTGGAATCTAAAGTTACTTGTAGATGTAAAGACACATACATAACAGTGCCTTGTGGaagagaaaaacaaacaaagccTCCGAAGTGCAATCTTCCttgtaagataaaatataaatgtgggCATATGGAAGAGAATAAGCACGTTTGTCATTTTGGTGACTGCCCCTCTTGCAAAGCTGTGTGTTACAAGACTTACTCTAAATGCGGTCATGAGTGCAAAGCTACATGTCATGAATTTGTGGCTGTAATCTTCAAACAAGTGGAAAAGCCAGCCACGCCATGGGAAATAGAGCCTCCGAAGACTAAGATCATGAGTTTGGAATGCCCTCCATGTGAAACACCTGTCTCTCTCATCTGCTTTGGTGAACATGAGACAGAAGAGCAGCCTTGCCATTCGGCTAAACGTAGATGCTGTGGGCGACAATGTGGGCGTGCTTTGGCCTGCGGCAATCACACCTGCTCTCTTCTATGTCATCTTTATTCTCAAGACCCTAATTACCCAAATGTGCCTTACAAATGTCAACCGTGTAACAAAGAATGCCTTGTACCCCGTCCAGCGAAATGTGCGCAcaaatgttacaaaaaacagTGTCATCCAGGGCCTTGCCCACCATGTGAGATACTAGAAAGGATCCCATGTCATTGTGGAGTTACAGAATTATATTTACGCTGTAAAGAACTTAAAGATGCAACTGAGGAAATGTTGTCTTGTAAACAGCAATGTCCAAAGAACTTGAGCTGTGGGCATCGATGCCGCAACAATTGTCATCCTGGAGAATGCGGTGTAGGTCAAACATGTACGAAGAAAACTAAAGTCAGCTGTGCTTGTGGGAATTTGAGGAAAGAGTTCCCTTGCAACGTAGTAAAGAATGGCAAAAAGTTAGAATGTGATGAAACTTGCGAGTCTAAAAAGGTTGCGTTGAAATTAGAGAGAGAAAAAGAGGAATTGAGacagaaagagatggaagaGGAGAGGAATCGTAGGGAATTGGCAGAGTATGAGTGGAAGTTGAGCGGAAAGAAGAGGAAGTACAAGGAGAAGAAAGTTGTCACTAATGTTGACAACAGAAATTTTCTCCAAAAATATTGGATTCCTATATTGTCTGTGCTGATTGCAGGGTCGGCTATTATTTACTGTGTTATTTATGCATAA
- Protein Sequence
- MARRYRDAAAKLQQNVRKHLDVMKDLSSSEDEEPFESTVLEGVFQSYWRGGGDTQLLNRTKNLLEEAISGRPITCLICIGSIKRSDAIWTCSHCHCYFHLSCIQKWSNDSISLRTEDTQGPISVVKPKKIEWCCPKCRFSYSKEEIPRKYRCFCEKTDDPPLHPWLLPHSCGEVCEKRLSSGDNCKHKCLLLCHPGPCPPCPQTVNGVCYCEKERKKVRCSAAKWSCGQQCKKTLFCNSHKCENICHEGDCPPCTYTSVQTCQCGSEKVKRPCNDPFWQCKKPCNKPYSCGYHKCEKVCHAGPCGSCPNSGTRSCPCGANQRFVQCPDVMETCLGTCNKKHENCEHSCPEKCHKGPCPPCQVLVQKKCLCSAHERSLPCSKDYKCETKCRGTRPCGKHACARKCCNGNCPPCEKPCDKPLQCGRHKCTMVCHRGPCYPCPLESKVTCRCKDTYITVPCGREKQTKPPKCNLPCKIKYKCGHMEENKHVCHFGDCPSCKAVCYKTYSKCGHECKATCHEFVAVIFKQVEKPATPWEIEPPKTKIMSLECPPCETPVSLICFGEHETEEQPCHSAKRRCCGRQCGRALACGNHTCSLLCHLYSQDPNYPNVPYKCQPCNKECLVPRPAKCAHKCYKKQCHPGPCPPCEILERIPCHCGVTELYLRCKELKDATEEMLSCKQQCPKNLSCGHRCRNNCHPGECGVGQTCTKKTKVSCACGNLRKEFPCNVVKNGKKLECDETCESKKVALKLEREKEELRQKEMEEERNRRELAEYEWKLSGKKRKYKEKKVVTNVDNRNFLQKYWIPILSVLIAGSAIIYCVIYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00737154;
- 90% Identity
- -
- 80% Identity
- -