Rfor024893.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- nfxl1
- Assembly
- GCA_963082605.1
- Location
- OY720227.1:1222152-1224623[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.52 1.8e+04 -3.2 1.4 14 19 133 138 133 138 0.83 2 18 0.063 2.1e+03 -0.3 0.4 4 10 169 175 168 175 0.95 3 18 1.5e-07 0.0052 17.7 15.9 3 19 186 202 185 202 0.95 4 18 2.1e-09 7e-05 23.6 13.4 1 19 237 255 237 255 0.93 5 18 0.84 2.8e+04 -3.9 1.9 6 10 280 284 279 284 0.83 6 18 1.6e-10 5.4e-06 27.2 14.0 1 19 290 308 290 308 0.99 7 18 8.1e-07 0.027 15.4 18.3 3 19 345 361 344 361 0.93 8 18 1 3.4e+04 -5.3 2.2 5 10 384 389 384 389 0.88 9 18 3e-06 0.1 13.6 18.3 1 18 395 412 395 413 0.97 10 18 2.5e-10 8.4e-06 26.6 13.0 1 19 422 440 422 440 0.99 11 18 4.1e-05 1.4 9.9 5.1 9 19 488 498 486 498 0.92 12 18 0.0019 64 4.6 8.6 1 11 508 517 508 518 0.96 13 18 0.16 5.2e+03 -1.5 3.5 14 18 547 551 547 552 0.87 14 18 0.077 2.6e+03 -0.6 0.4 7 12 567 572 567 572 0.84 15 18 1e-05 0.34 11.9 4.7 1 11 588 598 588 599 0.97 16 18 0.24 8.2e+03 -2.1 1.5 14 18 612 616 612 617 0.85 17 18 8.3e-05 2.8 8.9 15.3 4 18 630 645 628 646 0.85 18 18 2.7e-05 0.9 10.5 12.3 1 16 687 701 687 706 0.89
Sequence Information
- Coding Sequence
- ATGGCTCGGCGATACCGAGATGCCGCTGCGAAACTGCAGCAAAACGTGCAAAAACATTTGGAAGGGATGAAGGACCTTTCTTCGTCGGAAGATGAAGAGCCTTTTGAAAATTCCGTCCTTGAAGGTGTATTCCAGAGCTACCAGAGGGGTGGCGGAGATTCCCATTTGCTCAATCGAACAAGAAACCTCTTAGAAGAAGCTATAAGCGGCCGACCAATAACATGCCTCATTTGCATAGGTAGTATTAAAAGAGCTGATGCTATTTGGACCTGTGAGCACTGCCATTGTTATTTCCATCTTTCCTGCATCCAGAAATGGGCGAATGACAGTATAAGCCTAAGAATTGATGATCCGCAGTCGCCCATTTCAGTTTTCAAACCTAAAAAAGTTGAGTGGGAGTGTCCGAAATGCCGGCATTCGTATTCTAAGGAAGAAATACCGCGTAAGTACCGTTGTTTTTGTGGAAAAACTGATGACCCGCCTCTTCATCCATGGCTGATACCTCATTCCTGTGGAGAGATTTGTGAAAAGAGGTTATCTTTAGGAGACAACTGTAAGCATAAGTGTTTGCTGCTCTGCCACCCTGGTCCGTGTCCTCCGTGTCCTCAGACTGTTAATGGAGTCTGCTACTGTGAGAAAGAAAGGAAGAGAGTCCGTTGCAGCGCTGCTAAGTGGTCTTGCGGACAGCAGTGTAAGAAGACATTATTCTGTAACTCgcataaatgtgaaaatgtttgtcatGAAGGTGATTGCCCACCGTGTACGTACACAAGTGTCCAACAATGTCAATGTGGCAGTGAGAAAGTCAAGAGACCATGCAATGATCCTATTTGGCAATGTAAGAAACCTTGCAACAAGCCTTACTCTTGTGGCTATCACAAATGCGAAAAAGTCTGTCATGCTGGACCCTGCGGTTCTTGTCCCAACTCTGGAATGCGATCTTGCCCATGCGGAGCAAATCAACGATTTGTACAGTGTCCTGATGTTATGGAAACCTGTCTAGGAACGTGTAATAAGAAGCATGAGAATTGTGAACATAGTTGTCCAGAAAAATGTCATAAAGGACCTTGTCCTCCTTGCCAAGTAATGATACAAAAGAAGTGTTTCTGTTCTGCTCATGTCCGTTCCCTTCCATGCAGCAAAGATTATAAATGTGAGACTAAATGTAGAGGCACTAGACCTTGCGGCAAACATGGCTGTGCGCGAAAATGTTGCAACGGTAACTGCCCTCCATGTGAGAAAATATGCGACAAACCTCTACAGTGCGGCCGCCACAAATGTACTATGGTTTGTCATCGTGGCCCTTGCTACCCTTGTCCACTGGAGTCCAAAGTTACTTGCAGATGTAAGGAAACTTATGTAACTGTGCCTTGTGGCCGAGAAAAACACACAAAACCACCAAAATGCAGTCTTCTTTGTAAAACTAAATACAAATGTGGTCATATGGATGAGAATAGACATATTTGCCATTTCGGAGAGTGTCCTCCTTGCAAAGCTATATGCTACAAGACATATCCAAAATGCGGTCATGAATGTAAAGCAACCTGCCATCAATTTGTAGCCGTAGTCTTTAAACAAGCTGCTAAACCGGCTACACCATGGGAAATAGAGCCTCCAAAGACTAAGATAATGAATCTAGATTGTCCTCCATGTGAGACATCAGTCTCAATGATTTGTTTTGGAGAACATGAGACTGAGCAACAGCCATGTCATACCGCTACACGTAGATGCTGTGGCCGCCAATGTGGCCGTCCTTTGGCTTGCGGAAATCACTCTTGCACCCTACTCTGTCATCTTTACTCTCCTGATCCTAGTTATCCGAATGTGCCTTATAATTGCAAGCCATGTGATAAGGAATGCCTCGTGCCCCGTCCAGTTAAATGTGCACACAAATGTTACAAAAGACAATGTCACCCTGGACCTTGTCCACCATGTGAGATTCTTGAACGTATAGCATGTCATTGCGGAGTCACAGAATTGTATTTACGTTGCAGAGAGTTAAGTAATGCTACGGAAGAAATGTTGTCTTGCAAACAGCAATGCCCTAAGAACTTGAGCTGTGGACATCGGTGTCGTAACAACTGTCATTCTGGAGAGTGCGGTAAACAGATTTGTACTAAGAAAACCAAAACGTACTGTGTTTGTGGCAATTTGAAGAAAGAGTTCCCTTGCAATGTTGTTAAAAATGGTGAAGCAAACGTAGAATGCGATGAATCTTGTGAAGCTAAGcaaattgctttaaaaatagagaaagaaaaagagGAACTGAGAAGAAAGGAGATGGAAGAAGAGAGGAACCGTAAAGAACTAGCTGAGTATGAGTGGAAACTTAGTGGTAAGAAGAAGAAATACAAAGAAAGGAAGGTGGTCTTTAACGTAGACAATAGAAACTGGTTGCAGAAGTACTGGATTCCTATTTTGAGTGTTCTGATTGCTGTTTCAGCTATAGTGTATTGTGTATTTTATGCTTag
- Protein Sequence
- MARRYRDAAAKLQQNVQKHLEGMKDLSSSEDEEPFENSVLEGVFQSYQRGGGDSHLLNRTRNLLEEAISGRPITCLICIGSIKRADAIWTCEHCHCYFHLSCIQKWANDSISLRIDDPQSPISVFKPKKVEWECPKCRHSYSKEEIPRKYRCFCGKTDDPPLHPWLIPHSCGEICEKRLSLGDNCKHKCLLLCHPGPCPPCPQTVNGVCYCEKERKRVRCSAAKWSCGQQCKKTLFCNSHKCENVCHEGDCPPCTYTSVQQCQCGSEKVKRPCNDPIWQCKKPCNKPYSCGYHKCEKVCHAGPCGSCPNSGMRSCPCGANQRFVQCPDVMETCLGTCNKKHENCEHSCPEKCHKGPCPPCQVMIQKKCFCSAHVRSLPCSKDYKCETKCRGTRPCGKHGCARKCCNGNCPPCEKICDKPLQCGRHKCTMVCHRGPCYPCPLESKVTCRCKETYVTVPCGREKHTKPPKCSLLCKTKYKCGHMDENRHICHFGECPPCKAICYKTYPKCGHECKATCHQFVAVVFKQAAKPATPWEIEPPKTKIMNLDCPPCETSVSMICFGEHETEQQPCHTATRRCCGRQCGRPLACGNHSCTLLCHLYSPDPSYPNVPYNCKPCDKECLVPRPVKCAHKCYKRQCHPGPCPPCEILERIACHCGVTELYLRCRELSNATEEMLSCKQQCPKNLSCGHRCRNNCHSGECGKQICTKKTKTYCVCGNLKKEFPCNVVKNGEANVECDESCEAKQIALKIEKEKEELRRKEMEEERNRKELAEYEWKLSGKKKKYKERKVVFNVDNRNWLQKYWIPILSVLIAVSAIVYCVFYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00737154;
- 90% Identity
- iTF_00641074; iTF_00012618; iTF_00013701;
- 80% Identity
- -