Ekon056430.1
Basic Information
- Insect
- Eupristina koningsbergeri
- Gene Symbol
- -
- Assembly
- GCA_018907245.1
- Location
- JACCHV010002904.1:8755115-8758412[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.7e-13 2.6e-09 38.5 0.0 1 39 152 191 152 195 0.90 2 4 2.2e-12 2.1e-08 35.5 0.0 2 39 207 244 206 247 0.94 3 4 3e-19 2.9e-15 57.5 0.0 2 45 262 306 261 306 0.97 4 4 3.5e-19 3.3e-15 57.3 0.1 1 42 313 355 313 356 0.97
Sequence Information
- Coding Sequence
- ATGCCTGTTCCTCTGCCTCTGCCTTTTGCTCGCTCTAAATTCGCGTTCTCAGTCATTGATTGGGATTGGAAATCGGGACTGGCGGAAGGTATCGAGCTTCAGGTCTTCGAACCCACGAGACATCAAGCTTCAGTATTGGCTCGGACGAGACTGCGGATGCAGGGCCGCACTCCTGCAAATCTAATCACGAACATCCAGAGTTGCGACAGCGTCAAGATAAAGTTTGAAACCTTGCACACGATGGACTCCTCGGACACGATCGACATCGACAGTCACATGTCCGACCGAGCGAGCGTCAGCTCCAAGAACGCCGACGACAACATGATGATGATCACACCTGAGCTGTTGGGCCTCATGCCCTCCGGGAGCTCCGTGCACTCGGACTCCGGCGAGAATAACTCGCGCAGCCATTCGGGACAGTCGGGCTCACACCACCATGGGTCCAAGTCCTGGACACAAGAAGATATGGACGCGGCCCTCGAGGCTCTCAGAAATCACGACATGAGCCTGACCAAAGCTTCGGCGACGTTCGGTATACCCTCGACGACGCTGTGGCAGCGTGCGCACCGCCTTGGCATTGACACCCCCAAGAAGGACGGTCCCACCAAATCTTGGAGTGACGAGAGCTTGAACAACGCGTTGGACGCGTTGCGCACCGGTACAATTTCGGCGAACAAGGCCTCCAAAGCCTTCGGAATACCTTCGAGCACGCTCTACAAGATAGCGAGGCGGGAGGGCATCAGGTTGGCGGCACCATTCAACGCGAGTCCGACGACCTGGTCTCCGGCTGACCTTGACAGGGCATTAGAAGCTATCAGGTCCGGGCAGACCTCGGTCCAGCGTGCCTCCACCGAGTTCGGTATTCCCACAGGTACACTGTATGGGCGCTGTAAGAGGGAAGGCATCGAGCTTAGCAGGAGCAACCCGACTCCGTGGAGCGAGGACGCCATGACCGAAGCTCTCGAAGCTGTCAGGTTAGGACACATGAGTATTAATCAAGCGGCGATCCACTACAATTTGCCGTACTCATCGCTCTATGGACGATTCAAGCGTGGAAAGTACGAGGAACCGGTTGTTAATGAGATGTCGCAGGACGGATCTTCGCAGCACTTCCACCAGAGCCCAACTCAGAACCACTCGTCCTCTCTTCCCGACCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MPVPLPLPFARSKFAFSVIDWDWKSGLAEGIELQVFEPTRHQASVLARTRLRMQGRTPANLITNIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00691841; iTF_01523948; iTF_00845201; iTF_01514744; iTF_00131206; iTF_01102694; iTF_01101963; iTF_01306353; iTF_01218997;
- 90% Identity
- iTF_00691841; iTF_01523948; iTF_00845201; iTF_01218997;
- 80% Identity
- -