Rexs000713.1
Basic Information
- Insect
- Rhorus exstirpatorius
- Gene Symbol
- -
- Assembly
- GCA_963564615.1
- Location
- OY751313.1:13338163-13345471[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-12 8.9e-10 38.5 0.0 1 39 139 178 139 182 0.90 2 4 3.5e-12 2.8e-09 36.9 0.1 2 39 194 231 193 234 0.94 3 4 1.2e-18 9.9e-16 57.6 0.0 2 45 249 293 248 293 0.97 4 4 1.5e-18 1.2e-15 57.3 0.0 1 42 300 342 300 343 0.97
Sequence Information
- Coding Sequence
- ATGTTCTGTCACACAGGTCTAGGTCATTACGGTCATCATCCGGATCCTGGAGAGGTAGATCTACCGCCGGAGACACAGCCAACACCGCCAAGCGCTACTCTCGTCGGTACGACGATAACGCATCTTCGCGATACCGATCATCATTCGACGGatATACAGAATTGCGACAGCGTGAAAATTAAGTTCGAGACACTACACACGATGGATTCGTCGGACACGATCGACATCGACAGTCACATGTCCGATCGTGCGAGTGTTAGCTCGAAACACGCGGCCGATAACGACAATATGATGATGATAACACCGGAACTTTTGGGTCTCATGCCATCCGGGAGTTCCGTACACTCGGACTCGGGTGAGAATAATTCGCGCGGCGGTGGCTCGGGCTCGCATCATCATGGCTCGAAATCTTGGACCCAGGAGGACATGGACGCGGCGCTTGAGGCACTGAGAAATCACGATATGAGTCTCACGAAAGCGTCAGCGACCTTTGGAATACCCTCGACGACACTGTGGCAAAGGGCGCACAGGCTCGGGATCGACACACCGAAGAAAGACGGCCCGACGAAATCATGGAGCGACGAGAGCCTCAACAACGCCCTCGAGGCACTGAGAACGGGCACGATATCGGCGAACAAAGCGTCAAAGGCATTCGGCATACCGTCAAGTACGCTTTACAAAATCGCGCGAAGAGAGGGCATAAGGCTTGCCGCTCCGTTCAACGCGAGTCCAACGACATGGTCACCGGCCGATCTTGACAGGGCACTCGAGGCCATCAGATCGGGCCAGACGTCGGTCCAGAGAGCATCCACGGAATTTGGTATACCAACGGGTACGTTATACGGTAGATGCAAGAGAGAGGGCATAGAATTGAGCCGTAGCAATCCTACACCCTGGAGCGAGGACGCGATGACAGAGGCACTCGAGGCCGTCAGATTGGGTCACATGAGCATCAATCAAGCCGCTATACATTACAATCTACCTTACTCGTCTCTCTACGGGCGCTTCAAGAGGGGAAAGTACGAGGATCCGGTGGTGAGCGAGATGTCACAAGACGGCAGCAATCCTCACTTTCATTCGCATCAGAGCCCGCATCAGAATCACTCGTCGTCTCTACCCGATCAAATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKHAADNDNMMMITPELLGLMPSGSSVHSDSGENNSRGGGSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVVSEMSQDGSNPHFHSHQSPHQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00707774;
- 90% Identity
- iTF_00294380;
- 80% Identity
- -