Acol002579.1
Basic Information
- Insect
- Aphidius colemani
- Gene Symbol
- -
- Assembly
- GCA_030523065.1
- Location
- JAPYYR010000410.1:80736-82130[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-13 6.2e-10 38.5 0.0 1 39 138 177 138 181 0.90 2 4 8.7e-14 1.4e-10 40.5 0.1 2 39 193 230 192 233 0.94 3 4 4.2e-19 6.9e-16 57.6 0.0 2 45 248 292 247 292 0.97 4 4 5.1e-18 8.4e-15 54.1 0.0 1 42 299 341 299 344 0.96
Sequence Information
- Coding Sequence
- ATGTTTTGTCACACAGGGCTAGGTCATTATGGCCATCATCATCCAGATCCAGCTGATGTTGATCTACCACCTGAAACACAACCAACACCACCAAGCGCAACACTTGTGGGTACCACCGTGACACATTTGCGAGATCCAGATCATCTTTCaactgatataCAAAATTGTGAtactgttaaaataaaatttgagacATTACATACTATGGATTCATCAGATACAATTGATATTGATAGTCATATGTCTGATCGTGCAAGTGTTAGCTCAAAGCATGGTACTGATAGTgacaatatgatgatgataacacCTGAATTATTAGGCTTAATGCCATCTGGTTCAGTACATTCAGACTCTGGTGATAATAATTCTCGTATGCATACTGGTTCTGGACATCATGGATCAAAATCATGGACACAAGAAGATATGGATGCAGCTCTGGAAGCCTTAAGAAATCATGATATGAGTCTAACAAAAGCATcagCTACATTTGGAATACCATCGACAACATTATGGCAACGTGCACATAGATTGGGTATTGATACACCAAAAAAAGACGGACCAACAAAATCATGGAGTGatgaaagtttaaataatgcaTTAGAAGCATTAAGAAGTGGCTCAATATCAGCAAATAAAGCATCAAAAGCATATGGTATACCATCAAGtacattatataaaattgctaGAAGAGAAGGTATACGTCTTGCAGCACCATTTAATGCAAGTCCAACAACTTGGTCGCCAGCTGATTTAGATAGAGCACTTGAAGCAATTAGATCTGGACAAACATCTGTACAACGTGCATCAACTGAATTTGGTATACCAACTGGTACACTATATGGAAGATGCAAAAGAGAAGGCATTGAATTAAGTAGAAGTAATCCAACACCATGGAGTGAAGATTCTATGACTGAAGCACTTGAAGCTgtcaaaatGGGACATATGTCAATAAATCAAGCAGCAATACATTACAATTTACCATATTCATCACTTTATGGCCGTTTTAAACGTGGAAAATACGAAGATCAATCAGTTGTTAATGACATGTCACAAGATGGTTCAAATTcacattttcatcatcaaagtccacatcaaaatcatcattcATCATCACTTCCTGATCAAATGCCATATCAGGGAAGCTGA
- Protein Sequence
- MFCHTGLGHYGHHHPDPADVDLPPETQPTPPSATLVGTTVTHLRDPDHLSTDIQNCDTVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKHGTDSDNMMMITPELLGLMPSGSVHSDSGDNNSRMHTGSGHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRSGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDSMTEALEAVKMGHMSINQAAIHYNLPYSSLYGRFKRGKYEDQSVVNDMSQDGSNSHFHHQSPHQNHHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00707774;
- 90% Identity
- -
- 80% Identity
- -