Pnir061067.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- -
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010003622.1:3580-7547[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-13 2.8e-09 38.4 0.0 1 39 170 209 170 213 0.90 2 4 2.4e-12 2.3e-08 35.5 0.0 2 39 225 262 224 265 0.94 3 4 3.2e-19 3.1e-15 57.4 0.0 2 45 280 324 279 324 0.97 4 4 3.7e-19 3.6e-15 57.2 0.1 1 42 331 373 331 374 0.97
Sequence Information
- Coding Sequence
- ATGAGCGAGCAGTCGCGCTGCTCTCTTTTATTCGCGCGCCACACGTTTGCGCTCTGCCTCCCCCGCGACCCTCTTGCACCTGACCCCCGCGACCCACGTGCACGCGCGCAGAAGCGGAAGCTGGTCGAATTACCTGcagttcattttaaattgacGGCGCACGGCCAAGCCATTCCGATTATGCACCACTTGTCGTCGGCTGCGACGCCCGAGACTCGCACCGAGGGGATGCCAAGGAATACGCACATTCAGAGCTGCGACAGTGTGAAGATAAAGTTCGAAACACTGCACACGATGGATTCGTCGGATACGATCGACATCGACAGCCACATGTCGGATCGAGCGAGCGTTAGCTCGAAGAACGCCGATGACAACATGATGATGATCACACCCGAGCTGCTGGGCCTCATGCCCTCCGGAAGCTCGGTGCACTCGGACTCGGGCGAGAACAACTCGCGCAGCCACTCGGGACAGTCGGGCTCCCACCACCACGGCTCCAAGTCCTGGACACAGGAGGACATGGACGCGGCTCTCGAGGCCCTCAGGAATCACGACATGAGTCTCACCAAAGCCTCCGCGACGTTCGGCATACCGTCCACAACACTGTGGCAGCGGGCGCACCGTCTGGGGATCGACACGCCGAAGAAAGACGGGCCTACCAAGTCGTGGAGCGACGAGAGCCTGAACAACGCCCTGGACGCGCTGCGCACGGGCACCATTTCGGCGAACAAGGCCTCCAAGGCCTTCGGTATACCCTCGAGCACGCTGTACAAGATCGCGAGGCGGGAGGGCATCAGGCTGGCGGCGCCCTTCAACGCGAGTCCGACGACCTGGTCGCCGGCGGACCTCGACAGGGCGCTCGAGGCCATCAGGTCCGGCCAGACCTCGGTGCAGCGCGCCTCCACCGAGTTCGGCATCCCCACGGGCACACTCTACGGCCGTTGCAAGAGGGAAGGCATCGAGCTCAGCAGGAGCAACCCCACGCCTTGGAGCGAGGACGCCATGACCGAGGCTCTCGAGGCCGTTAGGTTAGGACACATGAGTATAAATCAAGCAGCGATCCACTACAATCTGCCGTACTCGTCGCTGTATGGTCGTTTCAAGCGTGGCAAGTACGAAGAACCGGTTGTCAATGAGATGTCGCAGGACGGCTCGTCACAGCATTTCCATCAGAGCCCGACCCAAAATCACTCGTCCTCCCTTCCCGATCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MSEQSRCSLLFARHTFALCLPRDPLAPDPRDPRARAQKRKLVELPAVHFKLTAHGQAIPIMHHLSSAATPETRTEGMPRNTHIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00707774;
- 90% Identity
- iTF_00707774;
- 80% Identity
- iTF_01523948;