Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.1e-13 3.2e-10 39.0 0.0 1 39 74 113 74 117 0.90

2 4 7.5e-13 1.1e-09 37.2 0.1 2 39 129 166 128 169 0.94

3 4 2.7e-19 4e-16 57.9 0.0 2 45 184 228 183 228 0.97

4 4 3.1e-19 4.6e-16 57.7 0.1 1 42 235 277 235 278 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.1e-13	3.2e-10	39.0	0.0	1	39	74	113	74	117	0.90
2	4	7.5e-13	1.1e-09	37.2	0.1	2	39	129	166	128	169	0.94
3	4	2.7e-19	4e-16	57.9	0.0	2	45	184	228	183	228	0.97
4	4	3.1e-19	4.6e-16	57.7	0.1	1	42	235	277	235	278	0.97

Coding Sequence: ATGGATTCTTCGGACACGATCGATATCGACAGTCACATGTCGGATAGAGCGAGCGTAAGCTCAAAAAATGCAGCGGACAGCGACAATATGATGATGATCACGCCTGAACTTCTCGGACTCATGCCTTCTGGCAGTTCGATTCACTCGGACTCGGGTGAAAACAATTCGAGAGGTCATTCTGGACAATCGAGTTCACATCATCATGGTACCAAATCTTGGACTCAGGACGACATGGACGCCGCGTTGGAAGCCTTAAGGAATCACGACATGAGTCTTACGAAAGCATCTGCTACATTTGGTATCCCATCGACGACGCTCTGGCAAAGAGCACATCGTTTAGGCATCGACACGCCAAAAAAGGACGGACCTACGAAATCCTGGAGCGACGAGAGTTTAAATAATGCGTTAGAAGCATTAAGGACAGGAACGATCTCAGCTAACAAAGCGTCGAAAGCGTTTGGTATACCTTCCAGTACTCTCTACAAAATAGCAAGAAGAGAGGGTATTAGATTAGCTGCACCTTTTAACGCGAGTCCTACTACCTGGTCACCTGCCGATCTGGATCGTGCTTTAGAAGCAATAAGATCTGGTCAAACGTCTGTCCAAAGAGCCTCGACAGAGTTTGGTATTCCCACGGGAACTCTCTATGGTAGGTGTAAAAGAGAAGGGATTGAACTTAGTAGAAGTAATCCTACGCCTTGGAGTGAAGATGCCATGACTGAAGCTCTCGAAGCTGTTAGACTAGGTCACATGAGCATCAATCAAGCAGCTATTCATTATAACTTACCTTACTCCTCGTTGTACGGACGTTTTAAAAGAGGCAAATACGAAGAACCAGTAGTCGGTGATTTATCACAGGACGGTACCAATCCACATTTTCATCAAAGTCCAACGCAGAATCACTCGTCCACGATTCCCGATCAAATGTCTTATCAGGAATTCATGAACTTACACGGCCAACAGTGGAAGCAGAACAAATGGTGA
Protein Sequence: MDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGTKSWTQDDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTNPHFHQSPTQNHSSTIPDQMSYQEFMNLHGQQWKQNKW

Sequence clustering based on sequence similarity using MMseqs2