Wpum033265.1
Basic Information
- Insect
- Wiebesia pumilae
- Gene Symbol
- -
- Assembly
- GCA_018907045.1
- Location
- JACCHZ010000022.1:6270906-6273283[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-13 1.6e-09 38.7 0.0 1 39 98 137 98 141 0.90 2 4 2.3e-12 1.3e-08 35.8 0.0 2 39 153 190 152 193 0.94 3 4 3.2e-19 1.8e-15 57.8 0.0 2 45 208 252 207 252 0.97 4 4 3.6e-19 2.1e-15 57.6 0.1 1 42 259 301 259 302 0.97
Sequence Information
- Coding Sequence
- ATGTCTCACCTCTACCTTGCTTTTGCAGACATTCAGAGCTGCGACAGCGTGAAGATAAAGTTCGAAACACTGCACACGATGGACTCGTCGGACACGATCGACATCGACAGCCACATGTCGGATCGAGCGAGCGTTAGCTCCAAGAACGCCGACGACAACATGATGATGATCACACCCGAGCTTCTGGGCCTGATGCCCTCCGGAAGCTCGGTTCACTCGGACTCGGGCGAGAACAACTCGCGCAGTCATTCGGGCCAGTCGGGCTCCCATCACCACGGCTCCAAGTCCTGGACACAGGAGGACATGGACGCGGCCCTCGAAGCTCTCAGGAATCACGACATGAGTCTCACCAAAGCCTCCGCGACCTTCGGCATACCGTCGACAACGTTGTGGCAGCGCGCCCATCGTCTGGGCATCGACACGCCGAAGAAGGACGGACCGACCAAGTCGTGGAGCGACGAGAGCCTGAACAACGCCCTTGATGCGCTGCGCACGGGCACGATTTCGGCGAACAAAGCCTCCAAAGCCTTCGGAATACCCTCGAGCACGCTCTACAAGATCGCGAGGCGAGAGGGCATCAGGCTGGCAGCTCCCTTCAACGCGAGCCCGACGACCTGGTCACCGGCTGACCTCGACAGGGCGCTCGAAGCCATCAGGTCTGGACAGACTTCCGTGCAGCGCGCCTCCACCGAGTTCGGCATCCCCACGGGTACGCTCTACGGACGCTGCAAAAGGGAAGGTATCGAGCTGAGCAGGAGCAACCCGACGCCCTGGAGCGAGGACGCCATGACCGAGGCTCTTGAAGCTGTCAGGTTAGGACACATGAGTATAAATCAAGCTGCAATCCATTACAACCTGCCGTACTCGTCGCTATATGGTCGCTTCAAGCGAGGCAAGTACGAAGAACCAGTTGTCAATGAAATGTCGCAGGACGGATCATCGCAGCACTTTCATCAGAGTCCGACTCAGAATCACTCGTCCTCCCTTCCCGATCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MSHLYLAFADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00707774;
- 90% Identity
- iTF_00707774;
- 80% Identity
- iTF_01218997; iTF_00845201;