Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9.4e-13 2.5e-09 38.8 0.0 1 39 94 133 94 137 0.90

2 4 7.6e-12 2e-08 35.9 0.0 2 39 149 186 148 189 0.94

3 4 1e-18 2.7e-15 57.8 0.0 2 45 204 248 203 248 0.97

4 4 1.2e-18 3.1e-15 57.6 0.1 1 42 255 297 255 298 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9.4e-13	2.5e-09	38.8	0.0	1	39	94	133	94	137	0.90
2	4	7.6e-12	2e-08	35.9	0.0	2	39	149	186	148	189	0.94
3	4	1e-18	2.7e-15	57.8	0.0	2	45	204	248	203	248	0.97
4	4	1.2e-18	3.1e-15	57.6	0.1	1	42	255	297	255	298	0.97

Coding Sequence: CTCGTTAAAATTCCAGATATCCAAAGCTGCGACAGTGTGAAGATAAAGTTCGAGACGCTGCACACGATGGACTCGTCGGACACGATCGACATCGACAGCCACATGTCCGACCGGGCGAGCGTCAGCTCGAAGAACGCCGACGACAACATAATGATGATAACGCCGGAGCTGCTTGGGCTGATGCCCTCGGGCAGCTCGGTCCATTCTGACTCGGGTGAGAACAATTCGCGGAGCCACTCGGGCCAGTCGGGCTCGCATCACCACGGCTCCAAGTCCTGGACGCAGGAGGACATggacgcggcactcgaggcgcTCAGGAATCACGATATGAGCCTTACCAAAGCCTCCGCGACCTTCGGCATCCCATCGACGACGCTGTGGCAGCGCGCCCACCGGCTGGGCATCGACACGCCAAAAAAGGACGGCCCGACCAAGTCGTGGAGCGACGAAAGCCTAAACAACGCCCTCGACGCCCTGCGCACCGGCACGATCTCCGCCAACAAGGCCTCCAAGGCCTTCGGCATACCATCCAGCACGCTTTATAAAATCGCGAGGCGAGAGGGCATCAGGCTGGCCGCGCCGTTCAACGCGAGCCCGACCACCTGGTCGCCGGCGGATCTGGATCGGGCCCTCGAGGCGATCAGGTCCGGCCAGACGTCCGTCCAGAGGGCCTCGACCGAGTTTGGCATACCCACGGGCACACTGTACGGCAGGTGCAAGCGCGAGGGCATCGAGCTCAGCAGGAGCAACCCGACGCCCTGGAGCGAGGACGCGATGACGGAGGCGCTCGAGGCCGTGAGATTGGGACACATGAGCATCAATCAAGCGGCAATCCATTACAATTTGCCGTACTCGTCGCTGTACGGTCGCTTCAAGCGCGGCAAGTACGAGGAGCCGGTAGTGAACGAGATGTCGCAGGACGGCTCGTCGCAGCACTTCCACCAGAGCCCGACCCAGAATCACTCCTCCTCCCTTCCCGACCAGATGCCTTACCAGGGCAGCTGA
Protein Sequence: LVKIPDIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNIMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQNHSSSLPDQMPYQGS

Sequence clustering based on sequence similarity using MMseqs2