Kgib011138.1
Basic Information
- Insect
- Kradibia gibbosae
- Gene Symbol
- -
- Assembly
- GCA_018907135.1
- Location
- JACCHX010000007.1:8346474-8348383[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-13 1.2e-09 38.6 0.0 1 39 127 166 127 170 0.90 2 4 2e-12 9.6e-09 35.7 0.0 2 39 182 219 181 222 0.94 3 4 2.8e-19 1.3e-15 57.7 0.0 2 45 237 281 236 281 0.97 4 4 3.2e-19 1.5e-15 57.5 0.1 1 42 288 330 288 331 0.97
Sequence Information
- Coding Sequence
- ATGGACAATTGGCATTCCGAGGCACAAATCACATTTCAATCCAGACTTATTAACATGCACCGCGTAAGGGACGAGGCTACCGAGCGCATGTCTATCGGCCCTTATCCCTTTGCAGATATCCAGAGCTGCGACAGCGTCAAGATAAAGTTCGAGACGCTGCACACGATGGATTCGTCGGACACGATCGACATCGACAGCCACATGTCCGACCGGGCGAGCGTCAGTTCGAAGAACGCCGACGACAACATGATGATGATAACGCCCGAGCTCCTGGGCCTGATGCCCTCAGGGAGCTCCGTCCACTCGGACTCCGGTGAAAACAACTCGCGCAGCCATTCCGGGCAGTCAGGCTCGCACCATCACGGCTCCAAGTCTTGGACGCAGGAGGACATGGACGCGGCCCTCGAGGCTCTCAGGAACCACGACATGAGCCTCACAAAAGCCTCCGCGACTTTCGGCATCCCCTCGACGACGCTCTGGCAGCGGGCGCATCGGCTGGGCATCGACACCCCGAAGAAGGACGGGCCCACCAAGTCTTGGAGCGACGAGAGCCTCAACAACGCCCTCGACGCCCTCCGCACCGGCACGATCTCGGCCAACAAGGCCTCCAAGGCCTTCGGCATACCCTCGAGCACTCTTTACAAGATAGCGAGGCGGGAGGGCATCAGGCTGGCCGCGCCCTTCAACGCGAGCCCCACGACCTGGTCGCCAGCGGACCTCGACAGGGCCCTCGAGGCCATCAGGTCCGGCCAGACCTCGGTGCAGCGCGCCTCCACCGAGTTCGGCATACCCACCGGGACGCTTTACGGCCGCTGCAAGAGGGAGGGCATCGAATTGAGCAGGAGCAACCCTACGCCCTGGAGCGAGGACGCGATGACAGAGGCCCTCGAGGCCGTCAGATTGGGACACATGAGTATAAATCAAGCGGCGATCCATTACAATCTGCCCTACTCGTCACTGTACGGACGCTTCAAGCGCGGCAAGTACGAGGAACCGGTCGTTAATGAGATGTCGCAGGACGGATCGTCGCAGCACTTCCATCAAAGTCCAACCCAGAATCACTCCTCCTCCCTTCCCGACCAAATGCCTTACCAGGGCAGCTGA
- Protein Sequence
- MDNWHSEAQITFQSRLINMHRVRDEATERMSIGPYPFADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00707774;
- 90% Identity
- iTF_00707774;
- 80% Identity
- iTF_01523948;