Equa032393.1
Basic Information
- Insect
- Euplagia quadripunctaria
- Gene Symbol
- -
- Assembly
- GCA_963859945.1
- Location
- OY982589.1:7181090-7183435[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.3e-06 0.00043 21.5 4.2 1 23 6 29 6 29 0.95 2 20 0.002 0.2 13.1 0.2 3 23 36 57 34 57 0.95 3 20 6.3e-06 0.00063 21.0 0.3 2 23 66 88 66 88 0.97 4 20 5.5e-07 5.5e-05 24.3 2.4 2 23 97 119 96 119 0.95 5 20 0.00021 0.021 16.2 3.7 2 23 127 149 127 149 0.97 6 20 2.2e-05 0.0022 19.3 2.5 2 23 158 180 157 180 0.96 7 20 1.4e-07 1.4e-05 26.2 1.2 1 23 186 209 186 209 0.98 8 20 0.018 1.8 10.1 0.4 1 23 217 240 217 240 0.96 9 20 0.00051 0.051 15.0 0.5 2 23 254 276 253 276 0.96 10 20 2.2e-05 0.0023 19.3 1.1 1 23 302 325 302 325 0.97 11 20 0.018 1.8 10.1 2.2 2 23 362 384 362 384 0.95 12 20 0.0098 0.98 11.0 6.2 1 23 407 430 407 430 0.97 13 20 4.4e-05 0.0044 18.3 0.5 2 23 437 459 436 459 0.96 14 20 7.2e-05 0.0073 17.7 2.5 2 23 466 488 465 488 0.94 15 20 0.0075 0.76 11.3 2.2 1 23 494 517 494 517 0.97 16 20 0.19 19 6.9 7.1 2 23 525 547 525 547 0.95 17 20 6.5e-05 0.0065 17.8 0.6 1 23 554 577 554 577 0.97 18 20 0.017 1.8 10.2 0.5 1 20 584 603 584 607 0.88 19 20 0.039 3.9 9.1 2.8 5 23 624 643 621 643 0.90 20 20 1.1 1.1e+02 4.5 0.5 1 13 693 705 693 708 0.88
Sequence Information
- Coding Sequence
- atgtatcatctAGACTTTGTTTGTGACTACTGCTCGAGGacatttacaagaaaatataacttacagACACATATAGAAAACTGTCATGTAAACTCATCATCACACTGTGATATTTGTGAACAAAGCTTTGGCAGCCCAGCCGGCTTACAACTCCATCTATCGAGAGGACACAACAACTATGCTCAACCGTTTCCAGAATGCGATATATGTGGAAGAATTTTTACAAGAAAGCAAAACATTACATCTCATATGATCACTGTACACTTACAAGGGTTGGGAGATGATATACGGTGTAAATTGTGCGATAAAACTTTTACTACGGAGAGAAATTTGAAGAGGCACATGAATCAACAACATAATCCAAATGTGGAGTATCCTACATGTTATTATTGCAACAAGGTTTTCAAAGGAAAGCACTCTCTAATATCACACATCCACACTGTTCATAATATCAGTGAAAAAGATGCCATAAAATGTCACCTTTGTGAGAAAGTGTATACAAACACAAGGAATTTAAAAAGACATATTGAAATGTTTCATGGAGAACGAGGGGAATACAGATGTGATATTTGTCCTAAAGTGTACACTTCAAATCAAAGTCTAAGAAGACATCTCCGTACAACACACAGCACGGACAGTCACGAACAGTTTACATGCAACTTGTGTAGTAAAATGATCACTGGTAGAGAGAATTACGAAAGTCATGTACAGTATATTCATCAATCTGAAAATGAAACTAAAGTTAATGACACCGAAATTGTTTGTGATACTTGTCACCAGACTTATGAAGAAGAATCTCAATTACGGCAGCACATAAAGGTAGATCATTCTTTCAAAGCATTTTATAAGTACTGTAAAAAGGTGTTATTAAGACAGTATGGGACTGAGTTTGttagtaatatgtataattgtgAATACTGTCAGCACGTATTTCCTAGTGTGTATGATTTAAAAGATCATATGCGTATCAACCATGACACCGAATACTCTCTCTCCACTTGTAATGTATGCTTTAACAAGTTCTATTGTAAGGAAACAATGAGTGCCCACAAAAAGGTGTGTCTACCACCTCCAAACGTCAATTCCTGCAGTCACTGCGATAAGTTATTCACTGATATCTCAAGTTTAGAATTCCATACAAGGATATTTCACCCTCAAGCACAAATTGCCGACTCAAATATATCATCAACCAATATCGATGAAGATTTATCAACATCTTTTAAATGCCTTCATTGTGATCGGATGTATTACAGCGATCGTTCcttaaaacatcacataaaGTTGAAACACACATCTGATGAACAGGTAGAATGTGAATTTTGCGGTAAAATTTGCAGCAATAAATACTACTTGGCTTCTCATATTAAAATAGTACACAACAATGATTCTTGGTCTCGATGCGAATACTGTAATAAACAATTCAAATCTAAACGAAATATTAGAAGACATATCGAATATACACATCTTGGGATGCAAAGATACAAATGTATAGAATGTGAGACGTTATTCAAAGAAAAGCGCAGCTTACGGAAACACGTTAGAACAAAACATCCCAATTCTGCTGCATTCCCTCAATGTCATATATGCCACAAACGGTTTGAATCGGCAAAGTCCTGTAAGATCCACCTCAAGCTATTACATTCTTTTAATATGAACACCTATCCGTGCCATTTATGCTCTGTATCATTCAGCTCCAACGAAGCTTTGACCATTCATTTGGATACCAAACATTTAGCCGAAGATGAGATTTATAAGTGCGAGGAATGTAATCTCGTTTTCAAAGGACAGGAACGGTTTGACAGACACAATGGAGTTAGCCATGTAAATCTTGTAGCAAATATAAAGCAAAAGGTTTTACCTAGATGTATTCTCTGCATGAAGGATTTCAGCACTCGCAAAACATTAAAAAGgcatattaaaaagtttcataATGAATTTGATGTTGATGAACTGGCCACTTTTGGGTCAAGACGAAGAACATTCACTGTTGATTGCGAAGATTGTATTAAGAACTTCAGTGATGAGTTTCACTATAATGTTTACCAAAAGATAAAACATTTGAGAGATTCCATTATATTCAAATGTGAAAATTGTCATTCTTCATTTAATTCTCTAGAATATGCCATTCAGAGATACAAGATTACCAACGGAGATGCTTGCAAAACGAAAGCAATTCTAAGCGAACTTTGCACGACTGAAATGAGTGAAGAGGAGTCTGAATTCTCTGGCTTCGGTTCTCTGCATCAGCTACCAGAGAGCACGACTAGTGAATTTAACATTAAGCAAGAACCTTTGGAGGATTTCATAAACGAAGATGATATCAAAACAGAACCCGTGTCGCCTTAA
- Protein Sequence
- MYHLDFVCDYCSRTFTRKYNLQTHIENCHVNSSSHCDICEQSFGSPAGLQLHLSRGHNNYAQPFPECDICGRIFTRKQNITSHMITVHLQGLGDDIRCKLCDKTFTTERNLKRHMNQQHNPNVEYPTCYYCNKVFKGKHSLISHIHTVHNISEKDAIKCHLCEKVYTNTRNLKRHIEMFHGERGEYRCDICPKVYTSNQSLRRHLRTTHSTDSHEQFTCNLCSKMITGRENYESHVQYIHQSENETKVNDTEIVCDTCHQTYEEESQLRQHIKVDHSFKAFYKYCKKVLLRQYGTEFVSNMYNCEYCQHVFPSVYDLKDHMRINHDTEYSLSTCNVCFNKFYCKETMSAHKKVCLPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNIDEDLSTSFKCLHCDRMYYSDRSLKHHIKLKHTSDEQVECEFCGKICSNKYYLASHIKIVHNNDSWSRCEYCNKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALTIHLDTKHLAEDEIYKCEECNLVFKGQERFDRHNGVSHVNLVANIKQKVLPRCILCMKDFSTRKTLKRHIKKFHNEFDVDELATFGSRRRTFTVDCEDCIKNFSDEFHYNVYQKIKHLRDSIIFKCENCHSSFNSLEYAIQRYKITNGDACKTKAILSELCTTEMSEEESEFSGFGSLHQLPESTTSEFNIKQEPLEDFINEDDIKTEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677880;
- 90% Identity
- iTF_00707175; iTF_00637923; iTF_00637957; iTF_00636742; iTF_00636713; iTF_00909066; iTF_01166934; iTF_00405248; iTF_01360903; iTF_00441764; iTF_01197991; iTF_01198005; iTF_00824058; iTF_00441760; iTF_00157406; iTF_01502315; iTF_01502278;
- 80% Identity
- iTF_00707175;