Tjac000469.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387235.1:7729243-7731591[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.8e-06 0.00031 21.5 4.2 1 23 8 31 8 31 0.95 2 22 0.0018 0.15 13.1 0.2 3 23 38 59 36 59 0.95 3 22 5.7e-06 0.00046 21.0 0.3 2 23 68 90 68 90 0.97 4 22 4.9e-07 4e-05 24.3 2.4 2 23 99 121 98 121 0.95 5 22 0.00046 0.037 15.0 2.5 2 23 129 151 129 151 0.93 6 22 5.9e-05 0.0048 17.8 2.4 2 23 160 182 159 182 0.95 7 22 1.2e-07 9.7e-06 26.3 0.7 1 23 188 211 188 211 0.98 8 22 0.28 23 6.2 0.3 1 23 219 242 219 242 0.95 9 22 0.0005 0.04 14.9 1.0 2 23 255 277 254 277 0.96 10 22 3.5e-05 0.0028 18.5 1.0 1 23 303 326 303 326 0.97 11 22 0.97 78 4.5 0.9 2 21 334 353 333 354 0.92 12 22 0.25 20 6.4 4.5 3 23 364 385 363 385 0.95 13 22 0.0088 0.71 11.0 6.2 1 23 408 431 408 431 0.97 14 22 4e-05 0.0032 18.3 0.5 2 23 438 460 437 460 0.96 15 22 3.4e-05 0.0027 18.5 2.1 2 23 467 489 466 489 0.94 16 22 0.0068 0.55 11.3 2.2 1 23 495 518 495 518 0.97 17 22 0.17 14 6.9 7.1 2 23 526 548 526 548 0.95 18 22 6e-05 0.0048 17.8 2.4 1 23 555 578 555 578 0.97 19 22 0.016 1.3 10.2 0.5 1 20 585 604 585 608 0.88 20 22 0.032 2.5 9.2 3.0 5 23 625 644 622 644 0.90 21 22 7.3 5.8e+02 1.8 0.2 3 17 666 680 664 681 0.88 22 22 0.85 68 4.7 2.2 1 13 694 706 694 709 0.89
Sequence Information
- Coding Sequence
- ATGTATCACAATCAGCTGGACTTTGTCTGTGACTACTGCTCAAGGACATTCACAAGAAAATATAATTTACAGACACACATAGAAAACTGTCATGTTAACTCATCATCCCACTGTGATATTTGTGAACAAAGTTTCGGCAGTCCGGCTGGATTACAACTCCATCTATCGAGAGGACACAACAACTATGGCCAGTCGTTTCCAGAATGCGATATATGTGGCAGAATATTTACAAGAAAGCAAAATATCACATCACATATGATCACTGTACATTTACAAGGGCTAGGTGACGATATACGATGTAAATTATGTGATAAAACATTTACCACAGAGAGGAATTTAAAGAGGCATATGAACCAACAACATAATCCAGATGTGGAGTATCCTACATGCTATTATTGCAACAAGGTTTTTAAAGGAAAACACTCTTTGATCTCACACATCCATGCAGTTCATAATGCCAACGAAAAAGATGCTATAAAATGTCATTTGTGTGAGAAAGTTTACACAAATACAAGGAATTTAAAGAGACATGTTGAAATGTTTCATGGTGAAAGAGGAGAATTCAGATGTGATATTTGCCCTAAAGTGTATACTTCAAATCAGAGTTTAAGAAGGCACCTCCGTACAGCGCATAGTACGGATAGTCACGAACAATTTACTTGCAACTCGTGCCGTAAAATTATCGTCGGTAGAGAAAACTATGAAAGTCATGTACAGTATATTCATTCAGAAGTGGAAAATAAATTTAATGTCATCGATATTGTTTGTGAAACATGCCACCAGACGTACGAAGAAGAATCACAATTACGGCAGCATATAAAGAAAGATCATTCTTTCAAAGTGTTTTATAAATACTGTAAAAGTGTGTTGTTGAAGCAGTATGGATCTGGGTTTGTTAGTAATATGTATAATTGTGAATATTGTCAGCATGCTTTCCCGAGTGTGTATGAATTGAAAGATCATATGCGGATCAATCATGATACTGAATACTCTCTATCAACTTGCAATGTATGTTTCAACAAGTTTTTCTCCAAGGAAACAATGAGCGCCCACAAGAAAGTGTGTCTACCCCCACCCAACGTAAATTCTTGCTGTCACTGCGATAAATTATTTACTGATATCTCAAGTTTAGAATTCCATACAAGGATCTTTCATCCCCAAGCTCAAATTGCTGACTCCAACATCTCTTCAACCAATGTAGAGGAAGACTTATCTACATCCTTTAAATGTCTTCATTGCGATCGGATGTATTATAGCGATCGTTCTTTGAAACATCATATAAAGTTGAAACACACGTCCGATGAGCAGGTTGAATGTGAATTCTGCGGTAAAATTTGCAGCAACAAATACTATTTGGCTTCCCATATAAAAATAGTTCACAACAATGATTCTTGGTCTCGATGCGAGTACTGCGATAAACAGTTCAAATCTAAACGGAATATTAGAAGGCATATTGAATACACTCATCTTGGGATGCAGAGATACAAATGTATAGAATGTGAGACGTTATTTAAAGAGAAGCGCAGTTTACGGAAACACGTTAGAACAAAACATCCCAATTCTGCTGCTTTTCCTCAATGTCACATATGCCACAAACGGTTCGAATCGGCAAAATCCTGTAAAATACATCTAAAACTATTACATTCTTTTAATATGAATACACATCCTTGCCATTTATGCTCTATGTCATTTAGCTCAAGTGAAGCTTTGACTATACATTTGAACACAAAACATTTAGCCGAAGACGAGATATATAAATGTGAGGAGTGTAATCTCGTTTTTAAAGGACAGGAACGCTTCGACAGACACAATGGAGTGAGCCATGTGAATCTTGTACCTAATATAAAGCAAAAAGTTTTACCCAGGTGCATTATGTGCATGAAGGATTTCAGCACTCGCAAAACATTAAAAAGGCATATTAAAAAGTTTCATAATGAGTTCGATATTGATGAATTGGCCAATTTTGGGTCGATACGACGAACATTTATTATTGATTGCGAAGATTGCATTAAAAATTTTAGTGATGAATTTCACTTTAATGTGTACCAGAAAATTAAACATTTGAAAGATTCAATTATATTCAAATGTGAAAACTGTCATTGTTCGTTCAATTCTTTAGAATATGCCATTCAAAGATATAAGATTACTAATGGAGATGCGTGTAAAACGAAAGCAATTCTGAGCGAACTTTGTACTACGGAAATGAGTGAGGAAGACTCTGTATTTTCTGGCTTCGGTTCTTTGCATCAACTACCAGAGAGCACGACGAGTGAATTTATCATCAAACAGGAACCGTTAGAAGAATTAATGAATGAAGATAATATCAAAACGGAACCCATGTCGCCATAA
- Protein Sequence
- MYHNQLDFVCDYCSRTFTRKYNLQTHIENCHVNSSSHCDICEQSFGSPAGLQLHLSRGHNNYGQSFPECDICGRIFTRKQNITSHMITVHLQGLGDDIRCKLCDKTFTTERNLKRHMNQQHNPDVEYPTCYYCNKVFKGKHSLISHIHAVHNANEKDAIKCHLCEKVYTNTRNLKRHVEMFHGERGEFRCDICPKVYTSNQSLRRHLRTAHSTDSHEQFTCNSCRKIIVGRENYESHVQYIHSEVENKFNVIDIVCETCHQTYEEESQLRQHIKKDHSFKVFYKYCKSVLLKQYGSGFVSNMYNCEYCQHAFPSVYELKDHMRINHDTEYSLSTCNVCFNKFFSKETMSAHKKVCLPPPNVNSCCHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNVEEDLSTSFKCLHCDRMYYSDRSLKHHIKLKHTSDEQVECEFCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCHLCSMSFSSSEALTIHLNTKHLAEDEIYKCEECNLVFKGQERFDRHNGVSHVNLVPNIKQKVLPRCIMCMKDFSTRKTLKRHIKKFHNEFDIDELANFGSIRRTFIIDCEDCIKNFSDEFHFNVYQKIKHLKDSIIFKCENCHCSFNSLEYAIQRYKITNGDACKTKAILSELCTTEMSEEDSVFSGFGSLHQLPESTTSEFIIKQEPLEELMNEDNIKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677880;
- 90% Identity
- iTF_00707186;
- 80% Identity
- iTF_01502278;