Lqua022575.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754902.1:4901473-4903824[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4.6e-06 0.00031 21.5 4.2 1 23 8 31 8 31 0.95 2 21 0.00091 0.061 14.3 0.3 3 23 38 59 36 59 0.95 3 21 6.8e-06 0.00045 21.0 0.3 2 23 68 90 68 90 0.97 4 21 2.4e-06 0.00016 22.4 4.0 2 23 99 121 98 121 0.95 5 21 9.9e-05 0.0066 17.3 1.1 2 23 129 151 129 151 0.94 6 21 7e-05 0.0047 17.8 2.4 2 23 160 182 159 182 0.95 7 21 1.5e-07 1e-05 26.2 1.2 1 23 188 211 188 211 0.98 8 21 0.00037 0.025 15.5 0.6 1 23 219 241 219 242 0.95 9 21 0.00034 0.023 15.6 0.1 3 23 257 278 255 278 0.96 10 21 5.8e-05 0.0039 18.1 0.8 1 23 304 327 304 327 0.97 11 21 0.043 2.9 9.0 2.2 2 23 364 386 364 386 0.93 12 21 0.032 2.1 9.4 6.2 1 23 409 432 409 432 0.96 13 21 0.00017 0.011 16.6 0.9 2 23 439 461 438 461 0.96 14 21 4.1e-05 0.0027 18.5 2.1 2 23 468 490 467 490 0.94 15 21 0.0081 0.54 11.3 2.2 1 23 496 519 496 519 0.97 16 21 0.25 17 6.6 4.8 2 23 527 549 527 549 0.95 17 21 2.3e-05 0.0015 19.3 0.8 1 23 556 579 556 579 0.98 18 21 0.03 2 9.5 1.9 1 23 586 609 586 609 0.91 19 21 0.041 2.8 9.1 2.8 5 23 626 645 623 645 0.90 20 21 9.1 6.1e+02 1.7 0.1 2 17 666 681 665 682 0.86 21 21 3.5 2.4e+02 3.0 0.8 1 13 695 707 695 714 0.80
Sequence Information
- Coding Sequence
- ATGTATCTAAATCAGCTGGACTTTGTTTGTGATTACTGCTCAAGAACATtcacaagaaaatataatttacagacACACATTGAGAACTGCCATATAAACTCCTCATCCCACTGTGAAATATGTAATCAAAGCTTTGGCAGTCCCGCAGGCCTACAACTCCATCTGTCAAGGGGACACAACAACTACGCTCAACCGTTCCCAGAATGTGACATATGTGGAAGAATTTTCACAAGAAAGCAAAATATTACGTCTCATATGATAACAGTACACTTGCAAGGCTTAGGGGATGATATAAGATGTCAAATGTGTGATAAAACGTTTACTACTGAGAGAAATTTGAAACGGCATATGAATCACCAACATAACCCAGATGTGGAGTACCCTACGTGCTACTATTGTAACAAGGTGTTTAAAGGAAAACACTCGCTTATTTCACACATCCAAGCAGTCCATAATATCAGTGAAAAAGATGCTATCAAGTGTCACTTGTGTGAAAAGGTGTACACGAATACCAGGAATTTAAAACGGCACGTTGAAATGTTTCACGGAGAGAAAGGTGAATACCGATGTGATATTTGCCCTAAAGTGTACACTTCTAATCAGAGTTTGAGAAGGCATCTTCGTACCACACACAGTACGGACAGTAAGGAACAATTTCCATGCAACGAGTGTGGTAAGATTTTCATAGGTAGAGAAAACTATGATAGTCACGTTCagtatcatcataatatagaaATAGAAACTAAGGTTACGGAAAGTGAAATTATTTGCGAAACGTGTGATCAGGCTTTTGAGCTAGAATCTCAACTGAGGCAGCATATAAAGAAAGACCATTCTTTCAAAACTTTCTACCGGTATTGTAGAAAGGTTCTACTAAAGCAGTGTGGGACAGACtttattagtaatatttataattgcgAATATTGCCAGCACGCATTCCCAAGTGTGTATGCCTTGAAAGACCATATGCGTATCAATCATGATACTGAATATTCACTCTCCACTTGCAATGTATGTTTCAACAAGTTTTATTGTAAAGAAACGATGAGCGCTCACAAAAAAGTCTGTCTTCCCCCTCCGAACGTAAATTCTTGCAGTCACTGTGACAAGTTATTTACTGATATTTCAAGTTTAGAGTTTCATACGAAAATATTTCATCCTCAAGCGCAGATAGCGGACTCAAATATATCTTCAACTAACGTAGATGAAGATGTCTCAACATCGTTCAAGTGTCTACACTGTGATAGAATGTATTACAGTGATCGTTCATTGAAGCATCACGTGAAATTGAAACATACATCCGATGAACAAGTGGAATGCGAATTTTGCAACAAAATTTGTAGCAACAAATACTATTTAGCGTCTCATATAAAGATAGTACATAACAATGATTCCTGGTCTAGATGCGAGTACTGCGATAAACAGTTCAAATCGAAACGGAATATAAGACGTCACATTGAATATACACATTTAGGGATGCAAAGATACAAATGTATAGAATGTGAGACGTTATTTAAAGAAAAGCGAAGTTTACGTAAACATGTGAGGACTAAACACCCAAATTCTGCAGCATTCCCTCAATGCCACATATGCTACAAACGATTTGAGTCTGCCAAATCCTGTAAGATACACCTGAAGCTTTTGCATTCTTTTAATATGAATACGTACCCTTGTCACCTATGCTCTGTATCATTCAGTTCCAATGAAGCCTTAACGATACATTTGAATACAAAGCATTTAGCTGAAGATGAGATTTACAAATGTGAGGAATGCAATTTAGTATTTAAAGGCCAGGAACGTTTTGATAGACACAATGAAGTATGTCATGTGAATCTCGTGCCAAACTTAAAAGTGAAAGTGCTACCTCGTTGTATTTTGTGTATGAAAGATTTCAGTACTCGTAAAACGTTGAAAAGGcatattaaaaagtttcataacGAATTTGAAGTTGATGAACTTGCAACATTCGGTTCACGAACACATACATTCGTTATTGAATGTGAAGAATGTATTAAGAACTTTAGTGATGAATTTCATTACAACATTTACCAAAGGATTAAACATCTTAGGGATTCTGTTATATTCAAATGTGAATCTTGTCATTCTTCGTTTAACTCGCTCGAATATGCCATCCATCGGTACAAAATAACTAACAGTGATGCTTGCAAAACTAAAGCCATTCTGAGTGAACTATGTACAACAGAGATGAGTGAGGAAGAATCTGAGTTCTCTGGCTTCGGTTCTCTGCATCAGCTGCCCGAGAGTACTACGAATGAATTTACCGTGAAAATGGAACCTTTAGATGATTCGATGACTGATGATCAGATCAAAACGGAACCTATGTCTCCCTAA
- Protein Sequence
- MYLNQLDFVCDYCSRTFTRKYNLQTHIENCHINSSSHCEICNQSFGSPAGLQLHLSRGHNNYAQPFPECDICGRIFTRKQNITSHMITVHLQGLGDDIRCQMCDKTFTTERNLKRHMNHQHNPDVEYPTCYYCNKVFKGKHSLISHIQAVHNISEKDAIKCHLCEKVYTNTRNLKRHVEMFHGEKGEYRCDICPKVYTSNQSLRRHLRTTHSTDSKEQFPCNECGKIFIGRENYDSHVQYHHNIEIETKVTESEIICETCDQAFELESQLRQHIKKDHSFKTFYRYCRKVLLKQCGTDFISNIYNCEYCQHAFPSVYALKDHMRINHDTEYSLSTCNVCFNKFYCKETMSAHKKVCLPPPNVNSCSHCDKLFTDISSLEFHTKIFHPQAQIADSNISSTNVDEDVSTSFKCLHCDRMYYSDRSLKHHVKLKHTSDEQVECEFCNKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALTIHLNTKHLAEDEIYKCEECNLVFKGQERFDRHNEVCHVNLVPNLKVKVLPRCILCMKDFSTRKTLKRHIKKFHNEFEVDELATFGSRTHTFVIECEECIKNFSDEFHYNIYQRIKHLRDSVIFKCESCHSSFNSLEYAIHRYKITNSDACKTKAILSELCTTEMSEEESEFSGFGSLHQLPESTTNEFTVKMEPLDDSMTDDQIKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677880;
- 90% Identity
- iTF_00707186;
- 80% Identity
- -