Apln013268.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000553.1:684040-686388[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 9.1e-06 0.00056 20.3 3.3 1 23 8 31 8 31 0.95 2 20 0.00024 0.015 15.8 0.2 3 23 38 59 36 59 0.95 3 20 5.3e-06 0.00033 21.0 0.3 2 23 68 90 68 90 0.97 4 20 4.6e-07 2.8e-05 24.3 2.4 2 23 99 121 98 121 0.95 5 20 0.00051 0.032 14.7 3.7 2 23 129 151 129 151 0.97 6 20 7.2e-05 0.0045 17.4 2.1 2 23 160 182 159 182 0.95 7 20 1.7e-07 1e-05 25.7 1.3 1 23 188 211 188 211 0.98 8 20 0.028 1.7 9.3 1.0 1 23 219 242 219 243 0.96 9 20 0.015 0.95 10.1 1.9 3 23 257 278 255 278 0.94 10 20 1.3e-05 0.00081 19.8 1.7 1 23 306 329 306 329 0.98 11 20 0.015 0.94 10.1 2.2 2 23 366 388 366 388 0.95 12 20 0.0054 0.33 11.5 8.8 1 23 411 434 411 434 0.97 13 20 0.00015 0.0093 16.4 1.0 3 23 442 463 442 463 0.98 14 20 3.2e-05 0.002 18.5 2.1 2 23 470 492 469 492 0.94 15 20 0.00024 0.015 15.8 2.2 1 23 498 521 498 521 0.98 16 20 0.16 9.9 6.9 7.1 2 23 529 551 529 551 0.95 17 20 5.4e-05 0.0034 17.8 0.6 1 23 558 581 558 581 0.97 18 20 0.013 0.83 10.3 0.5 1 21 588 608 588 611 0.88 19 20 0.0079 0.48 11.0 2.9 5 23 628 647 625 647 0.91 20 20 0.48 30 5.4 0.5 1 13 697 709 697 712 0.89
Sequence Information
- Coding Sequence
- ATGCATCAAAATCATCTGGACTTTGTCTGTGATTACTGTGCTAGGACTTTCACAAGAAAATATAACCTACAAACGCATATAGAAAACTGTCATATCAATTCATCATCACACTGTGATATTTGTGGACAAAGCTTTGGCAGTCCAGCCGGCTTACAACTCCATCTGTCAAGAGGTCACAACAACTATGCTCAACCGTTTCCAGAATGCGATATATGTGGAAGAATTTTTACGAGAAAGCAAAATATTACATCTCACATGATCACCGTGCATTTACAAGGCTTAGGTGACGATATAAGGTGTAAATTGTGCGATAAAACTTTTACTACGGAGAGAAATTTGAAGAGGCACATGAATCAACAACATAATCCGCATGCGGAATATCCCACTTGCTATTATTGTAACAAGATTTTTAAAGGGAAACACTCACTTATTTCACACATCCACACAATACATAACATCAGTGAAAAAGACGCGATAAAATGCCACCTGTGTGAAAAAGTGTACACGAATATGAGGAATTTAAAAAGACATGTTGAAATGTTTCACGGAGAACGAGGGGAGTTCAGATGCGATATATGCCCCAAAGTGTACACTTCAAATCAGAGTTTAAGAAGGCATCTCCGCACAACACACAGCACGGACAGTAACGAACAATTTACATGCGACTTGTGTAGTAAAATTATCACCGGTAGAGAAAACTATGAAAGTCATTTACAGTATATTCATCATTCTGAAAGCGAATCCAAAACTAATGTCACTGAAATTATTTGTGAAACGTGTCACCAGACATTTGAAGAAGAGTGTCTGTTAAGGCAGCATATAAAGGAAGATCATTCTTTTGAAGCCTTTTATAAGTACTGTAAGAATGTTTTATTGAGAATGTACGGGTCTGAGTTTGTtgataatgtgtgtgtgtacagTTGCGAATATTGTCAGCACACATTCGCTAGTGTGTACGAACTAAAAGATCATATGCGGATAAATCACGACACTGAATACTCTCTCTCCACTTGTAATGTATGCTTCAACAAGTTTTACTGTAAGGAAACAATGAGTGCCCACAAAAAAGTATGTCTACCCCCACCTAATGTTAATTCTTGCAGTCATTGCGACAAGTTATTCACTGATATCTCTAGTTTAGAATTCCATACTAGAATATTTCACCCCCAAGCGCAGATTGCTGACTCAAATATATCTTCAACTAATGTAGACGATGATATATCAACGTCGTTCAAATGCCATCATTGTGATCGGATGTATTATAGTGACCGATCATTAAAACATCATATAAAGTTGAAACACACGTCTGATGAACAAGTAGGCTGTGAGTTTTGTGGTAAAATTTGCAGCAATAAGTACTATTTGGCTTCACACATCAAAATAGTGCACAACAATGATTCTTGGTCTCGATGTGAATATTGTGATAAACAGTTCAAATCTAAACGGAATATCAGAAGACACATTGAATATACACATCTAGGTATGCAAAGATACAAATGTGTCGAATGTGAGACGCTTTTTAAAGAGAAACGCAGCTTACGAAAACACGTCAGGACAAAACATCCCAATTCTGCTGCATTCCCTCAGTGCCATATATGTCACAAACGTTTTGAATCGGCCAAGTCCTGCAAGATCCATCTCAAGTTACTACATTCGTTTAATATGAACACATATCCTTGCCATCTGTGCTCCGTATCATTCAGCTCTAACGAAGCTTTGACGATACATTTGGACACAAAACATTTAGCTGAAGACGAAATATACAAGTGCGAAGAGTGTAATCTAGTCTTCAAAGGACAAGAACGTTTTGATAGACACAACGTAGTAAGCCATGTTAATCTGGtgtcaaatataaaacaaaagcttCTACCTAGATGCATTCTGTGTTTGAAGGATTTTAGCACGCGCAAGACTTTAAAAAGGCATATTAAGAAGTTCCATAACGAATTTGACGTTGATGACCTAGCTACTTTTGGCTCGAGAAGGAGGAACTTCACTGTAGACTGCGAAGATTGTATCAAGAATTTTAGTGATGAGTTTCATTACAATGTGTACcaaaaaataaagcatttaaaGGATTCGATTATATTCAAATGTGAGAATTGTCATTCATCGTTCAGCTCCCTGGAATATGCTATTCAAAGGTACAAGATTGCTAATAGTGATGGTTGCAAGACAAAGGCAATTCTAAGCGAGCTTTGCACGACTGAAATGAGTGAGGAGGAGTCTGAGTTTTCTGGGTTCGGTTCTCTTCATCAGCTACCGGAGAGCACGACCAGTGAATTTAACATTAAACAAGAACCTTTGATGGATGAAGATGATATCAAAATTGAACCGATGTCGCCTTAA
- Protein Sequence
- MHQNHLDFVCDYCARTFTRKYNLQTHIENCHINSSSHCDICGQSFGSPAGLQLHLSRGHNNYAQPFPECDICGRIFTRKQNITSHMITVHLQGLGDDIRCKLCDKTFTTERNLKRHMNQQHNPHAEYPTCYYCNKIFKGKHSLISHIHTIHNISEKDAIKCHLCEKVYTNMRNLKRHVEMFHGERGEFRCDICPKVYTSNQSLRRHLRTTHSTDSNEQFTCDLCSKIITGRENYESHLQYIHHSESESKTNVTEIICETCHQTFEEECLLRQHIKEDHSFEAFYKYCKNVLLRMYGSEFVDNVCVYSCEYCQHTFASVYELKDHMRINHDTEYSLSTCNVCFNKFYCKETMSAHKKVCLPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNVDDDISTSFKCHHCDRMYYSDRSLKHHIKLKHTSDEQVGCEFCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCVECETLFKEKRSLRKHVRTKHPNSAAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALTIHLDTKHLAEDEIYKCEECNLVFKGQERFDRHNVVSHVNLVSNIKQKLLPRCILCLKDFSTRKTLKRHIKKFHNEFDVDDLATFGSRRRNFTVDCEDCIKNFSDEFHYNVYQKIKHLKDSIIFKCENCHSSFSSLEYAIQRYKIANSDGCKTKAILSELCTTEMSEEESEFSGFGSLHQLPESTTSEFNIKQEPLMDEDDIKIEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677880;
- 90% Identity
- iTF_00707186;
- 80% Identity
- -