Ecoc043919.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958510875.1
- Location
- OY294069.1:172273849-172278817[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-101 7.1e-97 326.1 27.6 1 300 4 295 4 295 0.93 2 2 0.014 8.4e+02 0.8 3.5 120 164 293 337 292 369 0.79
Sequence Information
- Coding Sequence
- ATGTTAGATGCCGAAGAAAGATTGCGAGCCAAGAGATTGGCACGAGCTGAGGCCAGGGATATTCGTATGCGCGAACTGGAGAAACAACAGAAGGAACAGGAAGAAAATGCAGATAGGCAGTTTGACATGTTGGCCGAACCGGTGGCCAGGGTGGCCCGCACCAGTGTCAACAGGTATCTGTCTAGTCGGCGAAGCTCGGAAGATTCCCTGGAAGATGGCGGAAGCCTGAGAGAATTGCGAAACGAATTGAAAGAGGTCGAGGAGAAATTTAGGAAGGCGATGATAACGAATGCACAGCTGGACAATGAGAAAGCAGCACTCACGTATCAGTTGGAACTACTTAAAGATAGGTTACAGGAACTAGAAGAAGAATACGCTCAATTAAAAAGAGAACACAGAGAGAAATGTAGAGACCACGATCAACTGAAAAGGTTGTGTGCCAAATTGAAGGGCGATTTAGACGTAACGAAGGCCGAACTGGACGAGAGGGATCAGCTCATCCAAGCTCAAGGTTTGGTTATTGTCGCTGAAGACGTACCTCCCGAGGAAGCAAGCAACGGTGATATTAGTTTGAATAGTATGGGTACACCCAAAAAGTCATTAGTAAGGATAGAAAACGCTAAGTTATTGGAAGATGCGGGCGAAGGGACTTTAGATGTCCGACTTTCAAAGTTTGCGAAAGAGAAAAGCGATTTGCAAGATGAAATAAGCCATTTACAGTTAGAATTAGAGGAAGAAAAAAATAGGAAAAGAAAACCGCCGAACGCTATGAACGGACCATTGTCTGATTATGATTTGGACGGATCGGATTTACTAAAGGATGGAACTACCTTATTGGCCGATTATAAATTTAGAGCGCAAAAAGCCGAACAAGACGTGGCAACGTTACAAGCGACCGTGGCCAGGCTAGAAAGTCAAGTAGTTCGATACAAAGCCGCATCGGAAGCTTCCGAAAAATCCGAGGAGACTTTGAAGTCCGAAAAACGGAAACTTCAAAGAGAGgcTCGTGATGCCATAAATAGAGCCGAGGAAGTAGAAACGCAAAACCTACATTTACTGAAACGTTTGGACAAACTGAAGAATGCGAAGTCTACGTTGTTGAAAGAACTCTGA
- Protein Sequence
- MLDAEERLRAKRLARAEARDIRMRELEKQQKEQEENADRQFDMLAEPVARVARTSVNRYLSSRRSSEDSLEDGGSLRELRNELKEVEEKFRKAMITNAQLDNEKAALTYQLELLKDRLQELEEEYAQLKREHREKCRDHDQLKRLCAKLKGDLDVTKAELDERDQLIQAQGLVIVAEDVPPEEASNGDISLNSMGTPKKSLVRIENAKLLEDAGEGTLDVRLSKFAKEKSDLQDEISHLQLELEEEKNRKRKPPNAMNGPLSDYDLDGSDLLKDGTTLLADYKFRAQKAEQDVATLQATVARLESQVVRYKAASEASEKSEETLKSEKRKLQREARDAINRAEEVETQNLHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764735; iTF_00130524; iTF_00349120; iTF_00020280; iTF_00998684; iTF_00416513; iTF_00394513;
- 90% Identity
- -
- 80% Identity
- -