Cimp043983.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030704885.1
- Location
- JARQZK010002946.1:31499-41810[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-106 8e-102 342.8 36.0 1 300 70 360 70 360 0.95 2 2 0.025 1.1e+03 0.9 3.1 120 164 358 402 357 430 0.80
Sequence Information
- Coding Sequence
- ATGCACGAAAATCTAAATCTACATTCCGTATCATTTGAAGATTTGTTGCTTCAatctataaaacaaaaaaatcgcgaggagaaaaaaccgaaaaaaagaGTGGCTCCAGGGGCTGAAGTGATCACCACAAAAGATGCTTTGGAAAGAATATCTGTTAAGAACAACAAACCTTCGGAAAACTCAAAGATACCGAAAAAGAAAACCAAAGCTGAGGAACGACTGCGTGCCAAAAGACAGGCAAGAGCCGAGGCGCGGGAGATCCGCATGAAAGAGCTGGAGAAACAGCAGAAAGAACAGGAAGAAAATGCCGATCGGCAGTTTGACATGCTGGCTGAACCCGTGGCCAGGTCTGCAAGGACTAGTATCAACAGGTACATGTCCAGCCGGCGTAGTTCCGAGGATTCGTTGGAAGATGGTGGTAGTCTCAGAGAAATAAGGCATGAGCTCAAAGAAGTAGAAGATAAATTCAGAAAGGCTATGATAACTAATGCTCAACTTGACAATGAAAAGGCCTCCCTAACTTACCAAATAGAACTACTTAAGGATAAaCTACAAGAACTCGAGGAAGAGCAGTCGCAATTGAAGAGAGAACATAGGGAAAAATGTAGAGAACATGATCAATTGAAAAGGTTATGTGCGAAGCTCAAACGGGATTTAGAGGTGACAAAATCTGAACTTGATGAACGGGATCAACTAATAAAGGAACATGGTTTGGTGATAGTATCAGAGGAGGTCTTGGAAGAAAGTAATGGTGATATTAGTGTGAATAGTGTTGGTACTCCTAAAAAGTCATTAGTGAAAGTAGAAAATGCTCAGCTGTTAGAAAATGCAGGTGATGGTACATTAGATGTTAGACTTTCAAcatttatgaaagaaaaacaaGACCTTGAAGATGAAATAAGTCATTTGAAATTAGAATTAGAAGAAGAAAGAAGTAAACGAAGGAAATCACATTCGATTAACAGTACCAATGGCCCAATATCTGATTTCGATATTGATGGTGATGTACAACGAGATGGTAACAGCATTTTAGCAGATTACAAATTTAGGGCTCAAAAAGCTGAACAAGATGTTGCGACACTTCAAGCGACAGTTGCAAGGCTAGAAAGTCAAGTTGTTAGGTATAAAGCTGCCTCGGAGGCTTCAGAGAAGTCAGAAGAAACACTTAAGGCTGAGAAACGAAAACTACAGAGAGAAGCTCGAGATGCCATAAATAGAGCAGAAGAATTAGAAACTTCAAATCTTCACTTGCTCAAAAGGTTGGATAAACTGAAGAACGCGAAATCCACACTTTTGAAAGAGCTGTGA
- Protein Sequence
- MHENLNLHSVSFEDLLLQSIKQKNREEKKPKKRVAPGAEVITTKDALERISVKNNKPSENSKIPKKKTKAEERLRAKRQARAEAREIRMKELEKQQKEQEENADRQFDMLAEPVARSARTSINRYMSSRRSSEDSLEDGGSLREIRHELKEVEDKFRKAMITNAQLDNEKASLTYQIELLKDKLQELEEEQSQLKREHREKCREHDQLKRLCAKLKRDLEVTKSELDERDQLIKEHGLVIVSEEVLEESNGDISVNSVGTPKKSLVKVENAQLLENAGDGTLDVRLSTFMKEKQDLEDEISHLKLELEEERSKRRKSHSINSTNGPISDFDIDGDVQRDGNSILADYKFRAQKAEQDVATLQATVARLESQVVRYKAASEASEKSEETLKAEKRKLQREARDAINRAEELETSNLHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00646999;
- 90% Identity
- -
- 80% Identity
- -