Haxy005853.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- lrrfip2
- Assembly
- None
- Location
- chr5:214484-224576[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-103 7.3e-99 331.3 34.8 1 300 75 364 75 364 0.95 2 2 0.068 1.8e+03 -1.5 2.9 128 154 387 413 365 438 0.50
Sequence Information
- Coding Sequence
- ATGGAAAAAATATCGTCCTCGTCTTCGGGGAAGGTTTCTCCCGTCCCGACGGACGTCGTCGTCGTCGTCGGTCCCAGGTCCGTTTCCGGCAGCCTGAACGACGACCTGGACGATCTGGCGAAATCTTGCGGTTCCGGCCGCGAAAGTGAAATTTACGATTTCGACGATGACAGCAGCAGCGATGACATCATCTCCCAGTTCATGGAGGCTGCCTGTGGTGAGGCTGAAGAGCGTCTCCGCGTGAAGAGACAGGCGAGGGCAGAGGCGCGGGAGATCCGCATGAAAGAGCTGGAGAAGCAACAGAAGGAACAAGAGGAAAATGCCGACCGGCAGTTCGACATGCTGGCCGAGCCGGTCGCCCGAACAGCGAGGACCAGCATCAGCAGATACATGTCGAGCCGGAGGAGTTCGGAGGATTCCCTCGAGGACGGCGGCAGTCTCAGGGAATTGAGGCATGAACTTAGAGAAGTAGAGGACAAATTTAGGAAAGCTATGATAACTAATGCTCAACTTGATAATGAAAAATCCGCTCTTACTTATCAAATAGAACTACTTAAAGATAAATTACAAGAATTAGAAGAAGAGCAATCTCAGTTGAAGAGAGAGCACAAAGAGAAATGTAGAGAACACGATCAGATGAAGAGGTTATGTACAAAGCTCAAACTCGACCTCGAAGTAACGAAAACGGAGTTAGATGAAAGGGATAAACTTATAACTGAACACGGCTTAGTGATAGTGGCTGAAGAAATAGAAGAAACCAACGGTGATATTAGTATGAGTAGTGTGGGTACCCCCAAAAAGTCATTAGTGAAGGTAGAAAATGCTAAGTTTTTAGAGAACGCAGGCGATGGCACCTTAGATGTCAGACTTTCGAGATTCATCAAGGAGAAACGGGATCTTGAAGACGAAATAAATCATCTTAAATTAGAATTAGAAGAAGAAAAAAGTAAAAAGCGGAAGTCGCATTCTCTGGGAAGTACCAATGGTCCAGTATCTGATTACGAGACCGAAGGAGATACACAAAAAGACGGAAGTAGCTTATTGGCAGATTATAAGTTCAGAGCCCAAAAAGCCGAACAGGATGTCGCAACTTTGCAAGCAACAGTCGCAAGGTTGGAGAGCCAAGTGGTGCGATATAAAGCTGCATCCGAGGCTTCTGAAAAATTGGAAGAAACCCTAAAAACCGAGAAGAGGAAACTTCAGAGAGAAGCCCGAGACGCCATAAATAGGGCAGAAGAATTAGAAACATCGAATCTGCATTTGCTCAAACGGTTGGACAAACTGAAAAATGCAAAATCAACACTACTGAAGGAACTCTGA
- Protein Sequence
- MEKISSSSSGKVSPVPTDVVVVVGPRSVSGSLNDDLDDLAKSCGSGRESEIYDFDDDSSSDDIISQFMEAACGEAEERLRVKRQARAEAREIRMKELEKQQKEQEENADRQFDMLAEPVARTARTSISRYMSSRRSSEDSLEDGGSLRELRHELREVEDKFRKAMITNAQLDNEKSALTYQIELLKDKLQELEEEQSQLKREHKEKCREHDQMKRLCTKLKLDLEVTKTELDERDKLITEHGLVIVAEEIEETNGDISMSSVGTPKKSLVKVENAKFLENAGDGTLDVRLSRFIKEKRDLEDEINHLKLELEEEKSKKRKSHSLGSTNGPVSDYETEGDTQKDGSSLLADYKFRAQKAEQDVATLQATVARLESQVVRYKAASEASEKLEETLKTEKRKLQREARDAINRAEELETSNLHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00646999;
- 90% Identity
- iTF_00349120;
- 80% Identity
- -