Csep021782.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_907165205.1
- Location
- OU015577.1:37779006-37793503[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-105 3.3e-100 336.5 35.9 1 300 29 318 29 318 0.95 2 2 0.06 2.6e+03 -1.4 2.8 128 154 341 367 319 392 0.50
Sequence Information
- Coding Sequence
- ATGATGGATGGCATTGGCGGCAGAAGAAGACTGGCTGCCAAGTCCTCGGCTGAAGACCAGGCCCTCGACCAAATTGCAAAAGAGGCTGAGGAGAGGCTCCGCGTGAAGAGGCAGGCCAGGGCTGAGGCGCGGGAGATCCGCATGAGAGAGCTGGAGAAGCAACAGAAAGAACAGGAGGAGAATGCCGACCGGCAGTTTGACATGCTCGCCGAGCCGGTGGCCAGGACCGCGAGGACGAGCATCAGCAGATACATGTCGAGCAGGAGGAGCTCGGAGGACTCCCTAGAGGACGGAGGCAGTCTCAGGGAATTGAGGCACGAGCTCAGAGAGGTAGAGGACAAATTTAGGAAAGCCATGATAACAAATGCTCAACTGGATAACGAAAAAGCCGCTCTAACCTATCAAATAGAACTACTTAAAGATAAATTACAAGAATTGGAGGAAGAGCAGTCTCAGTTGAGAAGGGAGCATAAGGAAAAGTGTAGGGAACACGATCAGATGAAGAGGTTATGTACGAAGCTCAAGCACGACCTTGAAGTGACGAAAGCTGAGTTGGACGAACGGGATAAGCTCATAACGGAGCATGGCTTGGTGATAGTGTCCGAGGAAGCGGAAGAAACCAACGGTGATATTAGTATGAATAGTTTGGGTACTCCAAAAAAGTCATTAGTGAAGGTAGAAAATGCGAAGTTGTTAGAGAATGCCGGCGATGGCACATTAGATGTGAGACTCTCGAGGTTCATCAAGGAGAAACGAGATCTCGAGGACGAGATAAACCATCTAAAATTAGAGTTAGAAGAAGAAAAAAGTAAAAAACGGAAATCGCATTCCGTCAGTAGTACCAACGGTCCGATAGCGGACTACGACGCGGACGGAGATGCGCAAAGGGATGGAAGTAGCCTGTTGGCCGACTACAAATTCAGGGCTCAGAAGGCCGAACAGGACGTTGCCACCCTTCAAGCGACAGTTGCCAGGTTGGAAAGTCAGGTGGTTCGATATAAGGCCGCGTCCGAAGCTTCCGAGAAGTTGGAGGAAACTTTGAAGGCCGAAAAGAGGAAGCTTCAAAGGGAGGCTCGAGACGCAATTAATAGAGCCGAAGAGTTGGAGACATCGAATCTGCACTTGCTCAAACGATTGGATAAATTGAAGAACGCGAAGTCGACACTTTTGAAGGAACTCTGA
- Protein Sequence
- MMDGIGGRRRLAAKSSAEDQALDQIAKEAEERLRVKRQARAEAREIRMRELEKQQKEQEENADRQFDMLAEPVARTARTSISRYMSSRRSSEDSLEDGGSLRELRHELREVEDKFRKAMITNAQLDNEKAALTYQIELLKDKLQELEEEQSQLRREHKEKCREHDQMKRLCTKLKHDLEVTKAELDERDKLITEHGLVIVSEEAEETNGDISMNSLGTPKKSLVKVENAKLLENAGDGTLDVRLSRFIKEKRDLEDEINHLKLELEEEKSKKRKSHSVSSTNGPIADYDADGDAQRDGSSLLADYKFRAQKAEQDVATLQATVARLESQVVRYKAASEASEKLEETLKAEKRKLQREARDAINRAEELETSNLHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00646999;
- 90% Identity
- iTF_00020280; iTF_00998684; iTF_00130524; iTF_00764735;
- 80% Identity
- -