Dvar012728.1
Basic Information
- Insect
- Drosophila varians
- Gene Symbol
- -
- Assembly
- GCA_018150405.1
- Location
- JAECWK010000135.1:5685716-5687348[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.6e-16 4.9e-13 48.3 0.0 3 45 356 398 354 398 0.95 2 3 0.048 91 2.7 0.0 28 37 428 437 427 442 0.90 3 3 5.2e-19 9.9e-16 57.0 0.0 2 39 464 501 463 505 0.95
Sequence Information
- Coding Sequence
- ATGAATCATCTTAAGTGGATGGGCCACTCGTCCACGATAATGGACATTCAGCGTTCGCTACGTAACGATTCCCAGACATGTGAGGTGGTGCTGGCCTCAAGAGATGGCGTACGAGTACGCGCCCATCTCTTCGTGCTGAGTACTTGCAGTGATCTGATGCGGAATATCCTAGTGGATGTGCCCCCGGGACAGGAGGCTACTATCATGCTGCCAGACATACGGGGTGAACTTCTGGAAAGCATGCTCTCATTCATATACATGGGCGAGACCAGTCTGCCCTCCGCCTCGCTGTCAGAGTTCCTGGAAGCCATCAATCTTCTGGGCATAAAGTCTGCCATTAGCTTTGAGTGCAATCCTTCGATGGCAACTACCTCGGTGAACGCCAGCTCAACGAGTGCAATGTCTGTGGAGACTGCCAAATCCATAACAGCACTGCAGATTGCCCAAGCCGACCTTTTGGAGGATGAGGAGGAAGTACCGGCAGGCCGCTCCGTTGCAGCTGCTGTTTTGGCCGACCCACCTACCCATTCGGCGCGTTCGCTAGAATATTTGGACGTATACGAAACTCCGAAGATCACGTACTCTATCGAGCATATGGATGGAAATTCAAGTGGCAATCAGTATATTCTAACGGAAAATACTGGAACCTTTACGATAACACAGAGTGCTACTCCATTGACCAAGCTAGATGCGTCGCAAAATTCGGCTAGTGTAGCCGATGGGGAGTTGCTGGAGGAAGACGTTGATGCAGATGGGGATGCGGACGCTGATCCAGACGCGGACGCAGAGCTTGCCGAAGATTCCGAGGAGCATGACAATCAGATATTGGAGGAGGAGTACGTGGCATCTGATCCTCCTTTTGAAATCGGAACCGCCGGCGACATGGACGACGATGATATGGCCGAGGATATAGATGAGGAAATACTGGATGTAAAAGCGCGTAAGTCAAGTGGGGGGAAAACGCGCGGCCGGCGTTCCTTGAGCGCCAAGGCAGGAAAGCGACCTTTTGGTAAGCATCAACAGGAATTTGTGACGCTCAAGCGGGAGATAAAGGATGATATAAGTGATGCTCTAGACCTGGCAGCCGATGCAGTGATTCTCGAGGGATTGAGCTTGCAAAAAGCAGCAGATCGCTATGACATCTCCAAAACTGTTCTGTGGCGAAGGGTCCGCACTAATCCAGCGTATATGCGAAACAACCGAGAGAGGCCATCACTTTCCGAGGCATATGAACGTCTGAAGAACGGAGACTCCCTCAAGAGCATTAGCCAGGACCTGCGTATTCCCATGTCCACCCTGCATCGGCATAAGGTGCGTCTTTCGGCCCAAGGTCGTCTGCCCGATTTTGTGGCCTGCCGCCGAAGGGATACCACGCCAAAGGATGAGCTGCGCGACAAATTGGCAAAGGCGGTGCATGCTTGCCTGAACGAGGGTATGTCCCAGAATCATGCAGCGAATCTCTTCGAGATACCCAAGAGCACACTGTGGCGACACCTTCAGCGATATCTTCCGGAAGAGAGCCGGAAGGTAAAGAAAGAACAGCCGAATGAGGAGGACGAGCTGTTGAACTAG
- Protein Sequence
- MNHLKWMGHSSTIMDIQRSLRNDSQTCEVVLASRDGVRVRAHLFVLSTCSDLMRNILVDVPPGQEATIMLPDIRGELLESMLSFIYMGETSLPSASLSEFLEAINLLGIKSAISFECNPSMATTSVNASSTSAMSVETAKSITALQIAQADLLEDEEEVPAGRSVAAAVLADPPTHSARSLEYLDVYETPKITYSIEHMDGNSSGNQYILTENTGTFTITQSATPLTKLDASQNSASVADGELLEEDVDADGDADADPDADAELAEDSEEHDNQILEEEYVASDPPFEIGTAGDMDDDDMAEDIDEEILDVKARKSSGGKTRGRRSLSAKAGKRPFGKHQQEFVTLKREIKDDISDALDLAADAVILEGLSLQKAADRYDISKTVLWRRVRTNPAYMRNNRERPSLSEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLSAQGRLPDFVACRRRDTTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRYLPEESRKVKKEQPNEEDELLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615666; iTF_00503911; iTF_00614826; iTF_00546065; iTF_00504090; iTF_00615005; iTF_00545887; iTF_00580076; iTF_00566192; iTF_00487921; iTF_00566002; iTF_00488119; iTF_00579903; iTF_00475857; iTF_00477261; iTF_00477432; iTF_00476028; iTF_00481639; iTF_00550347; iTF_00481465; iTF_00550176; iTF_00538879; iTF_00539063;
- 90% Identity
- iTF_00615666;
- 80% Identity
- iTF_00615666;