Dmon015413.1
Basic Information
- Insect
- Drosophila monieri
- Gene Symbol
- -
- Assembly
- GCA_035047585.1
- Location
- JAWNPJ010000106.1:12845022-12846584[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-15 2e-12 46.7 0.0 2 45 351 394 350 394 0.95 2 3 0.1 1.1e+02 2.7 0.0 28 37 424 433 423 438 0.90 3 3 1.4e-19 1.6e-16 59.9 0.0 2 41 460 499 459 501 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACGATAATGGACATCCAGCGCTCGCTGCGGAACGACTCCCAGACCTGTGAAGTGGTGCTGGCCTCCAGGGATGGTGTTCGGGTGCGCGCCCATCTCTTCGTGCTGAGTACTTGCAGCGATCTGATGCGGAATATTTTAGTGGATGTGCCCCCGGGACAGGAGGCTACCATCATGCTTCCGGATATACGGGGCGAACTGCTCGAGAGCATGCTCTCCTTCATATACATGGGAGAGACAAGCCTGCCCTCCGCGTCGCTCTCGGAGTTCCTGGAGGCCATCAACCTTCTGGGGATCAAGTCTGCCATTAGTTTCGAGTGCAATCCCTCGATTGCGAATCCCTCCGCGGACGTCAGCTCATCTAATACGATGGCTGTGGAGACTGCCAAGTCCATAACTGGTCTGCAGATAGCCCAGGCAGACCTTttggaggacgaggaggaggtcCCAGCACCCAGCACCGTTACAGCCACTGTCATGGCCGATCCGCCCACTCACTCCGCCCGTTCGCTGGAATATCTGGACGTATACGAGACCCCGAAGATCACCTACTCCATCGAGCACATGGATGGAAACACAAGTGGCAGTCAGTATATTCTTACGGAAAACACAGGAACCTTTACAATCACACAAAGCGCTTCTACGCTGGCCAAATTGACGGAAGCAACGGAAACATCGGCCAGCGTCGCCGATGGGGAGATGGCGGATGAAGATGTTGACGCAGATGGGGACGCGGAACCGGACGCGGACGTAGACCTTGCCGAAGACTCCGAGGAGCCCGACACTCAGATTCTGGAGGAGGAGTATGTGGCATCCAACCCGCCATTCGAAATAGGGAACGAAGGCGACATGGACGACGATGATATGCCCGAGGATATGGACGAGGAAATTCTGGACGTGAAGCCGCGGAAGTTTGGCGGAGGAAAAGCACGCGGCCGCCGACCCATGGGTGCCAGGACATCAAAGCGATCTTTCGGTAaacaccaccagcagcaacaggagtTCGTGAATCTGAAGCGGGACATCAAGGATGATATTAACGATGCCTTGGATATGGCAGCAGATGCAGTGATCCTCGAGGGACTGAGCTTGCAGAAGGCGGCCGATCGGTTCGACATCTCCAAAACGGTGCTGTGGCGTCGTGTGCGGACCAATCCAGCCTATATGCGGAACAATCGGGAGAGGCCATCCCTTTCCGAAGCATATGAGCGCCTTAAGAACGGAGACTCTCTGAAGAGCATCAGCCAGGACCTGCGCATCCCAATGTCCACTCTGCACCGGCACAAGGTACGGCTGTCGGCCCAAGGCCGCCTGCCAGACTTTGTGGCCTGTCGTCGGAGGGACACCACGCCGAAGGACGAGCTACGCGACAAATTGGCCAAGGCAGTGCACGCATGCCTGAACGAGGGCATGTCCCAGAACCATGCAGCGAATCTCTTCGAAATCCCTAAGAGCACACTTTGGCGGCACCTGCAGCGGCATGTGCCGGACGATGATCGGAAGGTGAAGAAGGAGCAGCAGGACGAGTACGAGGACGATCTGTTAAACTAG
- Protein Sequence
- MGHSSTIMDIQRSLRNDSQTCEVVLASRDGVRVRAHLFVLSTCSDLMRNILVDVPPGQEATIMLPDIRGELLESMLSFIYMGETSLPSASLSEFLEAINLLGIKSAISFECNPSIANPSADVSSSNTMAVETAKSITGLQIAQADLLEDEEEVPAPSTVTATVMADPPTHSARSLEYLDVYETPKITYSIEHMDGNTSGSQYILTENTGTFTITQSASTLAKLTEATETSASVADGEMADEDVDADGDAEPDADVDLAEDSEEPDTQILEEEYVASNPPFEIGNEGDMDDDDMPEDMDEEILDVKPRKFGGGKARGRRPMGARTSKRSFGKHHQQQQEFVNLKRDIKDDINDALDMAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLSEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLSAQGRLPDFVACRRRDTTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRHVPDDDRKVKKEQQDEYEDDLLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615487;
- 90% Identity
- iTF_00475857;
- 80% Identity
- iTF_00550347;