Dmal013789.1
Basic Information
- Insect
- Drosophila malerkotliana
- Gene Symbol
- -
- Assembly
- GCA_018153235.1
- Location
- JAECXV010000067.1:19120159-19121808[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.7e-16 1.7e-12 46.6 0.0 2 45 362 405 361 405 0.95 2 3 0.048 96 2.6 0.0 28 37 435 444 434 449 0.90 3 3 1.2e-19 2.3e-16 59.0 0.0 2 43 471 512 470 513 0.94
Sequence Information
- Coding Sequence
- ATGAATCATCTAAAGTGGATGGGCCACTCGTCCACGATAATGGACATCCAGCGCTCGCTGCGGAACGATTCCCAGAGCTGTGAAGTGGTGCTGGCCTCCAGGGATGGAGTTCGGGTGCGCGCCCATCTCTTCGTGCTGAGTACTTGCAGCGATCTGATGCGGAACATTTTAGTGGACGTGCTCCCGGGGCAGGAGGCCACCATCATGCTTCCTGATATACGGGGCGAACTTCTTGAAAGCATGCTTTCCTTTATATACATGGGAGAGACCAGCCTGCCCTCGGCGTCGCTCTCGGAGTTTTTGGAAGCCATCAATCTTTTGGGAATCAAGTCTGCCATTAGTTTTGAGTGCAATCCTTCGATTTCAAATCCCTCCGCGGACGTTAGCTCAGCTAATTCGATGGCTGTGGAGACTGCCAAATCCATATCTGGTCTGCAGATAGCCCAAGCAGAGCTTCTGGAGGACGAGGAGGAGGTCCCAGCCCCTAGTACCGTTGCAGCCACTGTCATGACTGACCCGCCCACTCACTCTGCACGTTCGCTGGAATATTTGGACGTGTACGAAACCCCGAAGATAACCTACTCCATCGAGCATATGGATGGAAACACAAGTGGAAATCAGTATATTCTTACGGAAAATACGGGAACCTTTACCATTACACAGACCGCTTCTTCTCTGAGCAAGCTGACAGACCCAACGGAAGCAGCGGCTAGTGTTGCCGATGCGGAAATGGCGGAAGAAGATGTTGACGCAGATGTTGATGGGGATGGAGACGCGGATCAGGACCCAGACGTAGACCTTGCTGAAGACTCCGAGGAACCCGACACCCAGATTCTAGAAGAAGAGTATGTGGCAACCAATCCGCCTTTCGAGATAGAAAATGCAGGAGACATGGACGACGATGATATGCCCGAGGAGATAGATGAGGAAATTCTGGAAGTAAAACCACGTAAGTTTGGTGGAGGAAAACCACGCGGCCGCCGTTCAATGGGTGCCAGGACGACAAGGAGGTCATTCGGTAAACACCACCAGCACCAGCAAGAGGAATTCGTTAATCTGAAGCGCGATATAAAGGATGATATTAACGATGCCCTGGACATGGCAGCAGATGCAGTGATCCTTGAGGGATTGAGCTTGCAGAAGGCAGCCGATCGATTCGACATCTCCAAAACGGTGCTCTGGCGTCGTGTACGCACTAATCCAGCCTATATGCGAAACAATCGGGAAAGACCATCACTTTCGGAAGCATATGAACGCCTTAAGAACGGAGACTCTCTGAAGAGCATCAGCCAGGACCTGCGTATCCCCATGTCCACTCTGCACCGGCACAAGGTACGTCTGTCGGCCCAAGGCCGTCTGCCCGATTTCGTGGCCTGTCGTCGCAGGGACACCACGCCGAAGGACGAGCTACGCGACAAATTGGCCAAAGCAGTACATGCATGCCTGAACGAGGGCATGTCCCAGAATCATGCAGCGAATCTCTTTGAAATCCCGAAGAGCACACTTTGGCGTCACCTTCAACGCCAGGAGGACCGGAAGGTTAAGAAGGAGCAGCAGGACGAGTACGAGGACGATCTGTTAAACTAG
- Protein Sequence
- MNHLKWMGHSSTIMDIQRSLRNDSQSCEVVLASRDGVRVRAHLFVLSTCSDLMRNILVDVLPGQEATIMLPDIRGELLESMLSFIYMGETSLPSASLSEFLEAINLLGIKSAISFECNPSISNPSADVSSANSMAVETAKSISGLQIAQAELLEDEEEVPAPSTVAATVMTDPPTHSARSLEYLDVYETPKITYSIEHMDGNTSGNQYILTENTGTFTITQTASSLSKLTDPTEAAASVADAEMAEEDVDADVDGDGDADQDPDVDLAEDSEEPDTQILEEEYVATNPPFEIENAGDMDDDDMPEEIDEEILEVKPRKFGGGKPRGRRSMGARTTRRSFGKHHQHQQEEFVNLKRDIKDDINDALDMAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLSEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLSAQGRLPDFVACRRRDTTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRQEDRKVKKEQQDEYEDDLLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615487;
- 90% Identity
- iTF_00475857;
- 80% Identity
- iTF_00539063;