Dmer013683.1
Basic Information
- Insect
- Drosophila merina
- Gene Symbol
- -
- Assembly
- GCA_035047645.1
- Location
- JAWNPH010000059.1:20309839-20311401[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-15 1.8e-12 46.9 0.0 3 45 352 394 350 394 0.95 2 3 0.071 1.2e+02 2.7 0.0 28 37 424 433 423 438 0.90 3 3 8.1e-19 1.4e-15 56.9 0.0 2 39 460 497 459 500 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACGATAATGGACATCCAACGCTCGCTGCGCAACGATTCCCAGACATGTGAAGTAGTGCTAGCCTCCAGGGATGGCGTTCGAGTACGCGCCCATCTCTTCGTGCTGAGTACTTGCAGTGATCTGATGCGAAATATTCTAGTGGATGTGCCGCCCGGGCAGGAGGCCACCATCATGCTGCCGGACATACGAGGGGAACTCCTTGAAAGCATGCTCTCATTCATATACATGGGAGAGACCAGTCTGCCCTCCGCTTCGCTGTCCGAGTTTCTGGAAGCCATCAATCTTCTGGGCATCAAGTCAGCTATAAGTTTTGAGTGCAATCCTTCCATTGCCAATTCCTCCATGGCCATCAACTCTGCCACTACAATGGCTGTGGAGGCTGCCAAATCCATAACTGGCCTGCAGATAGCCCAGGCCGAGctgctggaggaggaggaagaggtCCCGGCAGCCAGCTCCGTTGCAGCCACGGTTATGGCCGACCCACCCACTCACTCTGCACGTTCCCTGGAATACTTGGACGTGTATGAAACTCCGAAGATCACCTACTCCATCGAGCATATGGACGGGAATGCAGGTGGAAATCAGTTTATTCTGACGGAAAACACAGGAACCTTTACCATAACACAGAGTGCTACTACTTTGGCCAAGTTGGAGACAACGGAATCGTCGGCTGGGGTAGCCGATGGGGAGCTGGTCGATGACGAAGTGGACGGAGATGGGGATGAGGACGGAGATCCTGACGCGGACCCGGAGGCAGACCTGGCGGAAGATTCCGAGGGGCCCGACAATCAGATAATGGACGAGGAGTATGTGGCATCTGATCCGCCTTTTGAAATCGGAACTGCCGGCGACATGGACGACGATGATATGGCCGAAGATATGGAGGAGGAAATTCTTAGTGTGAAATCGCGTAAGCTAAGCGAGGCAAAACCGCGGAGCCGTCGTTCTGTAAACCCTAAGCCCTCGAAGCGTTCTTTCGGTAAACATCAACAGGAATTTACGACGCTCAAGCGGGATATAAAGGATGACATTAGTGATGCCCTGGATCTGGCAGCAGATGCCGTGATCCTAGAGGGATTGAGCTTGCAGAAGGCAGCAGATCGTTTCGACATCTCCAAGACAGTGTTGTGGCGTCGTGTGCGCACTAATCCAGCCTATATGCGGAACAATCGCGAAAGGCCTTCCCTTTCCGAGGCATATGAACGTCTTAAGAACGGAGACTCTCTGAAGAGCATCAGTCAGGACCTGCGGATTCCCATGTCCACTCTGCACCGCCACAAGGTGCGCCTTTCGGCACAGGGCCGTCTGCCTGATTTTGTTGCCTGCCGCCGAAGGGACACCACGCCAAAGGACGAGCTGCGTGACAAACTGGCCAAGGCAGTACATGCTTGCCTAAACGAAGGCATGTCACAGAATCATGCGGCGAATCTCTTCGAGATCCCCAAGAGCACACTATGGCGACACCTCCAGCGATATCTGCCCGAAGACAGCCGGAAGGTGAAGAAGGAACAGCAGGACGAGTGCGAGGACGAGCTACTAAACTAG
- Protein Sequence
- MGHSSTIMDIQRSLRNDSQTCEVVLASRDGVRVRAHLFVLSTCSDLMRNILVDVPPGQEATIMLPDIRGELLESMLSFIYMGETSLPSASLSEFLEAINLLGIKSAISFECNPSIANSSMAINSATTMAVEAAKSITGLQIAQAELLEEEEEVPAASSVAATVMADPPTHSARSLEYLDVYETPKITYSIEHMDGNAGGNQFILTENTGTFTITQSATTLAKLETTESSAGVADGELVDDEVDGDGDEDGDPDADPEADLAEDSEGPDNQIMDEEYVASDPPFEIGTAGDMDDDDMAEDMEEEILSVKSRKLSEAKPRSRRSVNPKPSKRSFGKHQQEFTTLKRDIKDDISDALDLAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLSEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLSAQGRLPDFVACRRRDTTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRYLPEDSRKVKKEQQDECEDELLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615487;
- 90% Identity
- iTF_00503911;
- 80% Identity
- iTF_00546065;