Datr003183.2
Basic Information
- Insect
- Drosophila atripex
- Gene Symbol
- -
- Assembly
- GCA_035045925.1
- Location
- JAWNOP010000012.1:14957992-14959635[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-16 1.7e-13 50.1 0.0 2 45 357 400 356 400 0.95 2 3 0.078 1.1e+02 2.6 0.0 28 37 430 439 429 444 0.90 3 3 8.2e-20 1.1e-16 60.2 0.0 2 42 466 506 465 507 0.96
Sequence Information
- Coding Sequence
- ATGAATCATCTAAAGTGGATGGGCCACTCGTCCACGATAATGGACATCCAGCGCTCGCTGCGAAATGACTCTCAGACCTGTGAAGTGGTGCTGGCCTCCAGGGATGGTGTTCGAGTGCGCGCCCATCTCTTTGTGCTGAGTACTTGCAGCGATCTGATGCGAAATATTTTAGTGGATGTGCCCCCGGGACAGGAGGCTACCATCATGCTTCCCGACATACGGGGCGAACTTCTCGAGAGCATGCTCTCCTTCATATACATGGGAGAGACAAGCCTGCCCTCCGCGTCGCTCTCGGAGTTCTTGGAGGCCATCAATCTTCTGGGGATCAAGTCTGCTATTAGTTTCGAGTGCAATCCCTCGATTGCAAATCCTTCCACGGACGTCAGCTCATCAAATACGATGGCTGTAGAGACTGCCAAGTCCATAACTGGTCTGCAGATAGCCCCGGCAGACCTTttggaggacgaggaggaggtcCCAGCATCCAGTACAGTTGCAGCCACTGTCATGACCGACCCGCCCACTCACTCCACCCGTTCGCTGGAATACTTGGATGTATACGAGACCCCCAAGATCACCTACTCCATCGAGCACATGGATGGAAATACAAGTGGCAGTCAATATATTCTAACGGAAAATACGGGGACCTTCACAATTACACAGAGCGCTTCTACCCTGGCCAAGCTGACGGAAGCAACGGAAACATCGGCCAGTGTTGCCGATGGGGAGATGGCTGATGAAGATGTTGACGCAGATGGGGACGCGGATCCGGACGCGGAAGTAGACCTTGCCGAAGACTCCGAGGAGCCCGACACTCAGATTCTGGAGGAGGAGTATGTGGCGGCCAACCCGCCCTTCGAAATAGGTAACGAAGGGGACATGGACGACGATGATATGCCCGAGGACATGGACGAGGAAATCCTGGATGTGAAGCAGCGAAAGTTTGGCGGAGCAAAATCGCGCGGTCGCCGATCCATTGGTGCGAGGACATCAAAGCGTTCGTTCGGTAAacatcaccagcagcagcaggagttCGTGAATCTGAAGCAGGACATAAAGGATGATATTAACGATGCTCTGGATTTGGCTGCAGAGGCAGTGATCCTCGAGGGACTCAGCTTGCAGAAGGCCGCCGATCGGTTCGACATCTCCAAAACGGTGCTGTGGCGTCGTGTGCGCACCAATCCAGCCTATATGCGAAACAATCGGGAGAGGCCATCCCTTTCCGAAGCATATGAGCGCCTTAAGAACGGCGACTCTCTGAAGAGCATCAGCCAGGACCTGCGCATTCCCATGTCCACACTGCACCGGCACAAGGTACGCCTGTCGGCCCAAGGCCGTCTGCCTGACTTTGTGGCCTGTCGACGGAGGGACACCACGCCGAAGGACGAGCTACGCGACAAATTGGCCAAGGCAGTGCACGCCTGCCTTAACGAGGGCATGTCCCAGAACCATGCAGCGAATCTCTTCGAAATCCCTAAGAGCACACTTTGGCGGCACCTTCAGCGGCATGTGTCGGACGATGACCGGAAGGTGAAGAAGGAGCATCAGGACGAGTACGAGGACGATCTGTTAAACTAG
- Protein Sequence
- MNHLKWMGHSSTIMDIQRSLRNDSQTCEVVLASRDGVRVRAHLFVLSTCSDLMRNILVDVPPGQEATIMLPDIRGELLESMLSFIYMGETSLPSASLSEFLEAINLLGIKSAISFECNPSIANPSTDVSSSNTMAVETAKSITGLQIAPADLLEDEEEVPASSTVAATVMTDPPTHSTRSLEYLDVYETPKITYSIEHMDGNTSGSQYILTENTGTFTITQSASTLAKLTEATETSASVADGEMADEDVDADGDADPDAEVDLAEDSEEPDTQILEEEYVAANPPFEIGNEGDMDDDDMPEDMDEEILDVKQRKFGGAKSRGRRSIGARTSKRSFGKHHQQQQEFVNLKQDIKDDINDALDLAAEAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLSEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLSAQGRLPDFVACRRRDTTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRHVSDDDRKVKKEHQDEYEDDLLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615487;
- 90% Identity
- iTF_00475857;
- 80% Identity
- iTF_00481639;