Dano017379.1
Basic Information
- Insect
- Drosophila anomalata
- Gene Symbol
- -
- Assembly
- GCA_035046425.1
- Location
- JAWNNY010002302.1:175574-177130[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4e-15 2.2e-12 46.7 0.0 2 45 349 392 348 392 0.95 2 3 0.077 1.2e+02 2.7 0.0 28 37 422 431 421 436 0.90 3 3 1e-19 1.6e-16 59.9 0.0 2 41 458 497 457 499 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACGATAATGGACATCCAGCGCTCGCTGCGGAACGACTCCCAGACCTGTGAAGTGGTGCTGGCCTCCAGGGATGGTGTTCGGGTGCGCGCCCATCTCTTCGTGCTGAGTACTTGCAGTGATCTGATGCGGAATATTTTAGTGGATGTGCCTCCGGGACAGGAGGCTACCATCATGCTTCCCGATATACGGGGCGAACTTCTCGAGAGCATGCTCTCCTTCATATACATGGGAGAGACCAGCCTGCCCTCCGCGTCGCTCTCGGAGTTTCTGGAGGCCATCAATCTGCTGGGGATCAAGTCTGCCATTAGTTTCGAGTGCAATCCCTCGATTTCAAATCCCTCCGCGGACGTCAGCTCGTCTAATACGATGGCTGTGGAGACTAAGTCCATAACTGGTCTGCAGATTGCCCAGGCAGACCTTAtagaggacgaggaggaggtcCCACCACCCAGTTCCGTTGCAGCCACTGTCATAGCTGACCCGCCCACTCACTCTGCGCGTTCGCTGGAATACTTGGACGTATACGAGACCCCCAAGATCACCTACTCCATCGAGCACATGGATGGAAACACAAGTGGCAGTCAATATATTCTAACGGAAAACACGGGAACCTTTACAATTACACAGAGCGCTTCTACCCTGGCAAAGCTAACGGACGCAACGGAAACATCGGCCAGTGTCGCCGATGGGGAGATGGCGGATGAAGATGTTGACGCAGAAGCGGACGCGGATCCGGATGCAGACGTAGACCTCGCTGAAGACTCCGAGGAGCCCGACACTCAGATTCTGGAAGAGGAGTATGTGGCAGCCAACCCGACATTCGAAATAGGCAACGAAGGCGACATGGACGACGATGATATGCCCGAGGATATGGACGAGGAAATTCTGGATGTGAAGCCGCGAAAGTTTGGCGGGGGAAAGTCACGCGGCCGCCGACCCATGGGTGCCAGGACATCAAAGCGATCTTTCGGTAaacaccaccagcagcaggagTTTGTGAATCTGAAGCGAGATATCAAGGATGATATTAACGATGCCCTGGATATGGCAGCAGATGCAGTGATCCTCGAGGGACTGAGCTTGCAGAAGGCAGCCGATCGATTCGACATTTCGAAAACGGTGCTGTGGCGTCGGGTGCGCACCAATCCAGCCTATATGCGAAACAATCGGGAGAGGCCATCCCTATCCGAAGCATATGAGCGCCTTAAGAACGGAGACTCTCTGAAGAGCATCAGCCAGGACCTGCGCATCCCCATGTCCACGCTGCATCGGCACAAGGTACGCCTTTCGGCTGAAGGCCGTCTGCCTGATTTCGTGGCCTGTCGTCGGAGGGACACCACGCCCAAGGATGAGCTACGCGACAAATTGGCCAAGGCAGTGCACGCCTGCCTGAACGAGGGCATGTCCCAGAACCATGCAGCGAATCTCTTCGAAATCCCAAAGAGCACTCTTTGGCGGCACCTTCAGCGTCACGTCCCGGACGATGATCGGAAGGTAAAGAAGGAGCAGCAGGACGAGTACGAGGACGATCTGTTAAACTAA
- Protein Sequence
- MGHSSTIMDIQRSLRNDSQTCEVVLASRDGVRVRAHLFVLSTCSDLMRNILVDVPPGQEATIMLPDIRGELLESMLSFIYMGETSLPSASLSEFLEAINLLGIKSAISFECNPSISNPSADVSSSNTMAVETKSITGLQIAQADLIEDEEEVPPPSSVAATVIADPPTHSARSLEYLDVYETPKITYSIEHMDGNTSGSQYILTENTGTFTITQSASTLAKLTDATETSASVADGEMADEDVDAEADADPDADVDLAEDSEEPDTQILEEEYVAANPTFEIGNEGDMDDDDMPEDMDEEILDVKPRKFGGGKSRGRRPMGARTSKRSFGKHHQQQEFVNLKRDIKDDINDALDMAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLSEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLSAEGRLPDFVACRRRDTTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRHVPDDDRKVKKEQQDEYEDDLLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615487;
- 90% Identity
- iTF_00475857;
- 80% Identity
- iTF_00475857;